Tpre002643.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:924763-929802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.001 0.016 15.1 0.1 1 23 30 53 30 53 0.95 2 27 0.00032 0.0052 16.7 1.2 1 23 59 82 59 82 0.96 3 27 0.00014 0.0024 17.8 6.2 1 23 88 111 88 111 0.97 4 27 0.0002 0.0033 17.3 0.6 1 23 117 140 117 140 0.95 5 27 3.3e-05 0.00054 19.8 1.3 1 23 146 169 146 169 0.96 6 27 3.5e-05 0.00057 19.7 2.2 1 23 175 198 175 198 0.96 7 27 1.6e-05 0.00026 20.8 1.8 1 23 204 227 204 227 0.96 8 27 5e-05 0.00082 19.2 0.6 1 23 233 256 233 256 0.96 9 27 1.6e-05 0.00026 20.8 1.8 1 23 262 285 262 285 0.96 10 27 0.00017 0.0028 17.5 0.4 1 23 291 314 291 314 0.96 11 27 0.0035 0.057 13.4 0.6 1 23 320 343 320 343 0.95 12 27 5.2e-06 8.5e-05 22.3 0.4 1 23 373 396 373 396 0.95 13 27 2e-05 0.00033 20.4 1.5 2 23 403 425 402 425 0.96 14 27 0.00049 0.0079 16.1 0.2 1 23 431 454 431 454 0.93 15 27 0.71 12 6.1 0.0 7 23 855 872 851 872 0.93 16 27 3.4e-06 5.5e-05 22.9 0.1 1 23 999 1022 999 1022 0.94 17 27 1.4e-05 0.00022 21.0 1.0 1 23 1057 1080 1057 1080 0.95 18 27 6.2e-05 0.001 18.9 0.0 3 23 1089 1110 1088 1110 0.96 19 27 0.00014 0.0024 17.8 0.3 3 23 1119 1140 1117 1140 0.97 20 27 0.00045 0.0074 16.2 0.5 3 23 1152 1173 1151 1173 0.98 21 27 0.002 0.032 14.2 0.1 1 23 1179 1202 1179 1202 0.95 22 27 0.012 0.2 11.7 0.2 1 23 1237 1260 1237 1260 0.94 23 27 0.19 3.1 8.0 0.1 7 23 1330 1347 1325 1347 0.93 24 27 0.00015 0.0024 17.7 0.5 1 23 1382 1405 1382 1405 0.97 25 27 0.0028 0.046 13.7 0.9 1 23 1411 1434 1411 1434 0.97 26 27 0.00017 0.0028 17.5 2.5 1 23 1438 1461 1438 1461 0.98 27 27 8.2e-06 0.00013 21.7 0.3 1 23 1467 1490 1467 1490 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAAGTGAGAAAAACTCCCAAGAAGTTGTCTCTGAAGATAATCTGGGTGAACATGACATTGTCGTTTCAGacgacgaaaaatacgtttgcgATATTTGCCAAGAAGCATTTAAAcaagaatcaagcatgataactcACCGAGACATAATTCACAATGATCTAAATGATTTCGCCTGCGACAATTGCGCCAAgaaatttgcgaaaaaatcgagtttgtttacgcaccaaaaaatGGTACACAAACATCGTGAAGATTTCTCATGCCATAAGTgccaaaaaaagtttgaaaataaatcatctttacttaagcacaaaagaatattccacgaagttttcaataattacTTATGTAACAATTGCGGgaagagattcggaaataaaaatagtttgctccttcacataaaaaatgtcCACGAGGGccgtaaagatttcgcttgcgacaagtgcgaagaaaaatttgtgtatCAGAGTCATTTGAATAGGCACCAAATGATTGTACACAAAGGCTACAAAAAATTCgcttgcaacaagtgcgaagaaaaattttcgtatcaaagtcatttgagtaggcaCCAAATGATTGTACATAAAGGCCGCAAAAATTtcgcttgcgacaagtgcgaagaaaaattttcgtatCAAAGTCATTTGAATAGACATCAAATGATTGTACACAAAGGCCGCAAAGAATTCgcttgcgacaaatgcgaagaaaaatttgtgtatCAAAGTACTTTAAATAGGCACCAAATGATGGTACACAGAGAccgcaaagatttcgcttgcgacaagtgcgaagaaaaattttcgtatCAAAGTCATTTGAATAGGCACCAAATGATTGTACACAAAGGCCACAAAGAATTCgcttgcgacaaatgcgaagaaaaatttgtgtatGAAAGTACTTTGAATAGGCACCAAATGATGGTACACAAAgaccgcaaagattttgcatgtgatagTTGTGAGCTCAAATTCGAGCGCAAAAGGCttttgatcaggcaccaaaaagAAATACATGAAAGTCGAATCGTTTATGCACCCAAAAAGAGTAATCCATCGGACTCGAGTAGCCACCAAGAAATGGTCTATGAGAGTCACGAAAATTTTGCCTGCGAAGTCTGCGGTAGAAAATTTAGTTATCGTAATGATTTGACCCGGCACATGAATTGGGTGCACGAAGGTCGCGATGATACAGTTTGCGACCAGTGCAATAAGAAATTTTCGTTTCGAGGAAATTTGTTAAGACACCAAAGAGTAACCCACGAGGGTCGCAGAGATTTCGAATGTGACATGTGTGGAAAGAAGtttggatataaaaaaagtttgcttcTACATCAAGCAGCAGCCCACAAATGTCGCAGAGATTACGTGAATGACAATTACGAGAGCCGATTTAGACAAAATCAGCAATCGTTCGCCCACCAGGagacagtccatgaaaatCGCCAAAATTACGTATTTGCAAGTTTCAGAGAGACATTTGAGGTTTCAAGCAATTTGATAACCCATCAAGAAACAGCTCAAGAAAGTTACAAAGATCACGTATACGACAATTGCGAGGacaaaattgaacaaaaacaGCAATCACTCACCCACCAAGAGTCGTTACACGAAGATCCCAAAGataaaatatgtgaaaatGTCGAGAAAACATTTGAAGATCAAAGACATTTGATCAAACGCCAAAAAATAAGCCAAGAAAATCGCCAAGATGACGTATGTGGAAGTTTCGAGGAGACGATTGTGGTTCTAAGCGGTTTGATCATACACCAAGAAACATCCCAAGAAGGACAGAGAGATGACGCCGCCAATAACGAGAGCgaatttgaacaaaaacagCAATCGCTCACCCACCACGAGACCTCACACGAAGATCCCAAAGATATCATATGTGAAAATGTCGGAGAGACATTCGAGGCTCGAAGCAATTTGATCATCTACCAAGAAACAATCCAAGTAGGTCCTAAAAATGACGTATGCGACAAAAATGAGAGTAAACTTGGACAAGAACAGCAATCGTTCACCCGCCAAGAGACGTTACAAGAAGATCCTAAAGATGGCATATGCGAAAATGTCGTGGAGACATTCGAGGCTCGAAGCAATTTAATCACCCACCCAGAAACAGCCCAAGAAGGTCACGAAGATGATGTATTTAACAATTGTGAGAACAAAATTGGAAAAACACAGCAATCGCTCCCCCCTCAAGAAACAGCCCAAGAAAATCATGAAGATTATGTGTATGATAAttgcgaaaataaaattgaacaaaaccATGAATTGCTCATCCACCAAGAAACAGCCAAAGAAAGTCACGAAGATGACGTAATCGACGATGTCGAGAAAAACCTTGAACAAACACAACCATTGCTCAcccatcaaaaaatagtactcGAAGCTCCCAAACTGCCCATCCACCAAGAAACAGCCCAAGAAAGTCACGAAGATGACGTAATCGACAATGTCGAAAAAAACCTTGAACAAACACAACAATTGCTCAGCCTCCATAAGTCGGTACATGAAGAGTTTAAACATTACTTATGTGATAACTCCGGCGAGACATTTGAGGATCCAAGCAGTTTGATTAAACACgaaaaaatagtacacgaagGTTTGATGGAAACTGATAAAGATGACTTATGTGATAATCCCGGGGAGATATTTGAGGTTCCAAGCAGTTCGCTCGCCCACCAAGAAACGGTCCAAGAAGTTCACGAAGATGACGTACTCGATAATTGTGAGaacaaaagtcaaaaaatacagCAATCTCTCACCCCTCAAGAAACAGCCCAAGAAAATCCTGAAGATTGCGTATATGACAATTGCGAGGACGAAATTGAGCAAAACCAGCAATTGCAATTGCTTACCTCCCAAGAgtcagtacacgaaggtccgAAAGAATACTCATGTGAAAATTTCGCGGAGACTGATAATCCAAGCAGTTCGAGCAGACATCAAGAAACAGCCcacgaaattaaaaaagattttttatgtgACGACTGCGGGAAAATATTTGAGGATCAGAGCGATTTGGctaaacaccaaaaaatagtacacgaTGATGAAATACattacttatgtgacaatTCCGGAGAGACATTTGAAGATCAAAGAAGTTTAATCGAACGCCAAAAAGTAACCCACGAAAGTAACAAAGATTTCTTATGTGACAATTGTGGGCAAACATTTGAGGATCAGAGCAATTTCACCAAACACCAAACAACAGCTCATGAAGGtggcaaagattactcattatgtgaaatttgcgGGGAAATTTTTGAGGATCCAAGCAGTTTGACTAGACACCAAGAAATATCACACGAAGATGGCAACGATTGCTTATTATGTGAAAATTGTGGAGAGACATTTGAAGATTTAAATAGTTTGACCaatcatcaaaaaacaattcacgAAGAACAAGAAAATCTCGAAGATGACTTATTATGTGAGATTTGCGGGGGGACATTTAAGGATCTAAGAACTTTGACTAGACATCAAGAAACAACCCACGAAAGTAGCAGAgattatttgtgtgaaaaTTGCGGGGAAACATTTGAGGATCTAAGCATtttgattagacaccaaaaaatgATACACGAAGGTGGCAAACATTACTTATGTGACGATTCCGAAGAGATTTTTGAGGATCAAAGGAGTTCGATCAAACGTCAAAAAATAACCCACGAAAGTAGTAAAGTCTTCTTATGTGACAATTGCATGCGAATATTCGAGGATCAGAGCAGTTTGACCGAACACCAAGCCACAGCTCATGCATGTGACAAAGATTATTCGTTCGAAAAGTGTGGGGAGGCATTGGAAGATAGAAGCAGTTTTACCAGAAACCAAGAAACAGACCACGTAGATCCCAAAGATCTCGTATACGTCAATTGTGAGAACACGATTGTAGAAAAACAGCATTTTCTCATCCTCCAAAAGCCGATACACGAAGAGGTCAAAGCTTACTTATGTGACGATACCGGGGAGACATTTCAAGATCGAAGCAGTttgatcaaacaccaaaaaatgaGCCATGAGAATAGCAAAGACTCATTGCGTGACGATTCCGGAGAGACATTTGAGGATCGTAGCAGTTGGACCAGTTTCCAAAAAACAGCCCACGAAAGTGGCAAaaattacgcgtgtgacaTGTGcacaaagaaatttggaactaaAGGTTATTTGCTCATCCATCAAAGgtcagtacacgagggtcgcaaagattatgcatgtgaccaGTGCGACAAGagatttggacaaaaatcgggTTGGTACTATCACAagaagacagtacatgaaggtagCTACGAATGCGAGAAATGCCAAAAAGTATTCGGATATAAATGTTATTTGCTCTCGCACATTAGAACTgtccacgatggtcgcaaagattatgaatgtgataaatgcgacaAGACATTTGGAGTAAAAGGTAATTTGACATTGCACATAAAAAGAGCCCACCAAGGTCACTAA
- Protein Sequence
- MDESEKNSQEVVSEDNLGEHDIVVSDDEKYVCDICQEAFKQESSMITHRDIIHNDLNDFACDNCAKKFAKKSSLFTHQKMVHKHREDFSCHKCQKKFENKSSLLKHKRIFHEVFNNYLCNNCGKRFGNKNSLLLHIKNVHEGRKDFACDKCEEKFVYQSHLNRHQMIVHKGYKKFACNKCEEKFSYQSHLSRHQMIVHKGRKNFACDKCEEKFSYQSHLNRHQMIVHKGRKEFACDKCEEKFVYQSTLNRHQMMVHRDRKDFACDKCEEKFSYQSHLNRHQMIVHKGHKEFACDKCEEKFVYESTLNRHQMMVHKDRKDFACDSCELKFERKRLLIRHQKEIHESRIVYAPKKSNPSDSSSHQEMVYESHENFACEVCGRKFSYRNDLTRHMNWVHEGRDDTVCDQCNKKFSFRGNLLRHQRVTHEGRRDFECDMCGKKFGYKKSLLLHQAAAHKCRRDYVNDNYESRFRQNQQSFAHQETVHENRQNYVFASFRETFEVSSNLITHQETAQESYKDHVYDNCEDKIEQKQQSLTHQESLHEDPKDKICENVEKTFEDQRHLIKRQKISQENRQDDVCGSFEETIVVLSGLIIHQETSQEGQRDDAANNESEFEQKQQSLTHHETSHEDPKDIICENVGETFEARSNLIIYQETIQVGPKNDVCDKNESKLGQEQQSFTRQETLQEDPKDGICENVVETFEARSNLITHPETAQEGHEDDVFNNCENKIGKTQQSLPPQETAQENHEDYVYDNCENKIEQNHELLIHQETAKESHEDDVIDDVEKNLEQTQPLLTHQKIVLEAPKLPIHQETAQESHEDDVIDNVEKNLEQTQQLLSLHKSVHEEFKHYLCDNSGETFEDPSSLIKHEKIVHEGLMETDKDDLCDNPGEIFEVPSSSLAHQETVQEVHEDDVLDNCENKSQKIQQSLTPQETAQENPEDCVYDNCEDEIEQNQQLQLLTSQESVHEGPKEYSCENFAETDNPSSSSRHQETAHEIKKDFLCDDCGKIFEDQSDLAKHQKIVHDDEIHYLCDNSGETFEDQRSLIERQKVTHESNKDFLCDNCGQTFEDQSNFTKHQTTAHEGGKDYSLCEICGEIFEDPSSLTRHQEISHEDGNDCLLCENCGETFEDLNSLTNHQKTIHEEQENLEDDLLCEICGGTFKDLRTLTRHQETTHESSRDYLCENCGETFEDLSILIRHQKMIHEGGKHYLCDDSEEIFEDQRSSIKRQKITHESSKVFLCDNCMRIFEDQSSLTEHQATAHACDKDYSFEKCGEALEDRSSFTRNQETDHVDPKDLVYVNCENTIVEKQHFLILQKPIHEEVKAYLCDDTGETFQDRSSLIKHQKMSHENSKDSLRDDSGETFEDRSSWTSFQKTAHESGKNYACDMCTKKFGTKGYLLIHQRSVHEGRKDYACDQCDKRFGQKSGWYYHKKTVHEGSYECEKCQKVFGYKCYLLSHIRTVHDGRKDYECDKCDKTFGVKGNLTLHIKRAHQGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -