Tpre002403.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
-
Assembly
GCA_000599845.3
Location
NW:133120-135324[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0091 0.15 12.1 0.9 1 23 18 41 18 41 0.90
2 26 1.4e-06 2.4e-05 24.0 0.5 1 23 47 70 47 70 0.97
3 26 0.94 15 5.8 1.3 1 11 76 86 76 90 0.88
4 26 0.0033 0.053 13.5 0.1 5 23 90 109 89 109 0.91
5 26 8.4e-06 0.00014 21.6 0.9 1 23 115 138 115 138 0.93
6 26 1.2 20 5.4 1.5 1 10 144 153 144 157 0.88
7 26 0.005 0.082 12.9 0.1 5 23 158 177 155 177 0.89
8 26 8.4e-06 0.00014 21.6 0.9 1 23 183 206 183 206 0.93
9 26 2.2e-05 0.00036 20.3 1.4 1 23 212 235 212 235 0.94
10 26 0.00023 0.0038 17.1 1.6 1 23 241 264 241 264 0.95
11 26 0.0004 0.0065 16.4 2.8 1 23 270 293 270 293 0.92
12 26 2.4e-05 0.00039 20.2 1.3 1 23 299 322 299 322 0.98
13 26 8.4e-07 1.4e-05 24.8 1.0 1 23 328 351 328 351 0.93
14 26 3.5e-05 0.00057 19.7 0.7 1 23 357 380 357 380 0.95
15 26 6.8e-07 1.1e-05 25.1 1.4 1 23 386 409 386 409 0.96
16 26 3.5e-06 5.7e-05 22.8 0.8 1 23 415 438 415 438 0.95
17 26 9.5e-05 0.0015 18.3 0.7 1 23 444 467 444 467 0.96
18 26 1.7e-05 0.00027 20.7 0.5 1 23 473 496 473 496 0.97
19 26 0.0015 0.025 14.6 0.7 1 23 502 525 502 525 0.94
20 26 0.0005 0.0082 16.1 0.1 3 23 533 554 532 554 0.92
21 26 4.7e-07 7.7e-06 25.6 1.5 1 23 560 583 560 583 0.95
22 26 0.00066 0.011 15.7 0.4 1 23 589 612 589 612 0.93
23 26 3.7e-05 0.0006 19.6 3.0 1 23 618 641 618 641 0.92
24 26 0.00016 0.0026 17.6 3.0 1 23 647 670 647 670 0.98
25 26 8.5e-06 0.00014 21.6 1.2 1 23 676 699 676 699 0.94
26 26 0.0012 0.02 14.8 1.9 1 23 705 728 705 728 0.97

Sequence Information

Coding Sequence
ATGTCAGCCTTGGTAAAATGTACAGTCGGAAATCAAAATAGCAAAATACGACACAAATGCGATTATTGCGGTAAGATTCTCTTAACTAAACGAAATTTGAAGAATCACGTGGATGGTGTTCATTTGAAGCTAAAGAAATTTGTTTGCGACGATTGTGGACAGCCATTCAGTTCTAATTGTAACTTGAATAGACACATTGTcacagttcatgaaaaaatcaaagaccaTAAATGCGAAGAATGTGGCAAGTATTTTGGACATGTGGAGGAATGTGAAAAgtcttttggtgaaaaaaGTAACTTGAATAAACACATTGCTgaagtacataaaaaaatcacagatCACAAATGCTTCGAGTGCGGCAAATCTTTTGGAAAAAAGGGTAATCTGATGAGGCACATCGATGCAGTTCATTTGACAATCAAAGACCATAAATGCGAAGAATGTGGCAAGTATTTTGGACATGTGGAGGAATGTGAAAAgtcttttggtgaaaaaaGTAACTTGAATAAACACATTGTTgaagtacataaaaaaatcacagatCACAAATGCTTCGAGTGCGGCAAATCTTTTGGAAAAAAGGGTAATCTGATGAGGCACATCGATGCAGTTCATTTGACAATCAAAGAACATAAATGCGAAGAATGTGGGAAGTTCTTTGGACAAAAAACTTACCTGATGAGACACATAGATTTAGTTCATCTCGGAATGAAAGAACACATGTGTGAGGAATGTGgaatgtcttttggtgaaaaaagtaaattacatAGACATATTGCCAgggtacatgaaaaaataaaaaatcacaaatgcTTCGAGTGTGACAAGTCGTTTGGAGAAAAGTCTTGTTTGATGAGACACATCGATgcagttcatttgaaactcAAAGAATTTAAGTGTGAGGAATGTGGAAAGTCTTATGGTAAAAAAAGGGACTTGCATACGCACATTGCTACAGTTCACGAAAAAATCACAGACTACAAATGCTTCGAGTGTGGCAAATCGTTTGGACAAAATAGTCATCTGATGAGGCATATCGATgcagttcatttgaaactAAAAGAACACATATGTAAGGAATGTGAAAAATCTTTTGGATATAAACGTGACTTAAATAGACACATTGCTGTAGTTcatgaaaaagttaaagatCACAAATGCAAAGAGTGTGACAAGTCTTTTGGACGAAAAAGTGATCTTATGAAGCATATAGATGTAATTCATTTGAATCTGAAAGAACACATGTGTGAGGAATGTGGCAAATCTTTTGGTTATACAAGTAATTTGAATAAACACATTAGTGTAGTACACAAGAAAATCAAAGATCATAAATGCGAAGAATGTGGCAAGTTctttggacaaaaaattaatatgataaACCACATAGATTCAGTTCATCTCGGAATCAAAGAATATATGTGCGGAGAATGTGAAAAGtcatttcgtaaaaaaagtaccTTAGATAACCACATTGACacagttcataaaaaaataaaagattacaAATGCTTGAAGTGTAGCGAAACTTTCGGACAAAAAAAGGATATGATGAAACACATAGATcttgttcatttgaaaaacagAGAAAACATGTGTAAAGATTGTGGAAAATCATTTGTTGCTAAAACGGACTTACTTCTACACATTACTGCggctcataaaaaaatcatagatcACAAATGCTTCGAGTGTGGTAAGACTTTTGGACGAAAGAGTAATCTTATGCGACACATTGATGTGGTTCATCTATTAATCAAAGAACATATATGCAAAGAATGTGGAAAGGCTTTGGGTTCTAAAAAAGACTTGAATAATCACATTAGTGCAACacacaaaaatatcaaagatCACAATTGCTTCGAGTGTGGCAAGTgttttggacaaaaaagcaGTTTGATGAGACACATAGATGAAGTTCatttaaaactcaaaaaatacaaatgtgaaaaatgtgaGAATATTTTTAGTAGAAAAAAGCACTTGCTTACACACATTACTAcggttcataaaaaaatcaaagatcacAAATGTTTCGAGTGCGGCAAGTCGTTTGGAGAAAAGAGTAATTTGATGAAACACATAGATTTAGTTCATTTGAATCTGAAAGAACACACGTGCGAGGAATGTAGGACAtcttttggtgaaaaaattaacttacaCAGACATATTGCCACAGTCCATAATAATATCAAAGATCACTAA
Protein Sequence
MSALVKCTVGNQNSKIRHKCDYCGKILLTKRNLKNHVDGVHLKLKKFVCDDCGQPFSSNCNLNRHIVTVHEKIKDHKCEECGKYFGHVEECEKSFGEKSNLNKHIAEVHKKITDHKCFECGKSFGKKGNLMRHIDAVHLTIKDHKCEECGKYFGHVEECEKSFGEKSNLNKHIVEVHKKITDHKCFECGKSFGKKGNLMRHIDAVHLTIKEHKCEECGKFFGQKTYLMRHIDLVHLGMKEHMCEECGMSFGEKSKLHRHIARVHEKIKNHKCFECDKSFGEKSCLMRHIDAVHLKLKEFKCEECGKSYGKKRDLHTHIATVHEKITDYKCFECGKSFGQNSHLMRHIDAVHLKLKEHICKECEKSFGYKRDLNRHIAVVHEKVKDHKCKECDKSFGRKSDLMKHIDVIHLNLKEHMCEECGKSFGYTSNLNKHISVVHKKIKDHKCEECGKFFGQKINMINHIDSVHLGIKEYMCGECEKSFRKKSTLDNHIDTVHKKIKDYKCLKCSETFGQKKDMMKHIDLVHLKNRENMCKDCGKSFVAKTDLLLHITAAHKKIIDHKCFECGKTFGRKSNLMRHIDVVHLLIKEHICKECGKALGSKKDLNNHISATHKNIKDHNCFECGKCFGQKSSLMRHIDEVHLKLKKYKCEKCENIFSRKKHLLTHITTVHKKIKDHKCFECGKSFGEKSNLMKHIDLVHLNLKEHTCEECRTSFGEKINLHRHIATVHNNIKDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-