Tpre010979.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:689715-692625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.6e-06 7.5e-05 22.5 4.7 1 23 175 198 175 198 0.96 2 22 0.0017 0.028 14.4 0.5 1 23 204 227 204 227 0.94 3 22 2.4e-07 4e-06 26.5 1.6 1 23 232 255 232 255 0.97 4 22 2.4e-05 0.00039 20.2 1.2 1 23 261 284 261 284 0.95 5 22 9.1e-05 0.0015 18.4 0.6 3 23 291 312 290 312 0.97 6 22 7e-07 1.1e-05 25.0 2.0 2 23 318 340 317 340 0.95 7 22 4.3e-07 7e-06 25.7 1.8 1 23 345 368 345 368 0.94 8 22 9.4e-06 0.00015 21.5 1.0 1 23 373 396 373 396 0.94 9 22 3.2e-05 0.00052 19.8 0.3 1 23 401 424 401 424 0.94 10 22 3.8e-06 6.1e-05 22.7 0.4 3 23 431 452 430 452 0.96 11 22 2.9e-06 4.8e-05 23.1 2.8 1 23 457 480 457 480 0.95 12 22 5.3e-06 8.6e-05 22.3 0.3 1 23 485 508 485 508 0.93 13 22 7.9e-06 0.00013 21.7 0.4 3 23 515 536 514 536 0.93 14 22 0.00099 0.016 15.1 0.7 1 23 541 564 541 564 0.90 15 22 9.7e-05 0.0016 18.3 5.0 1 23 569 592 569 592 0.96 16 22 4.1e-06 6.6e-05 22.6 3.2 1 23 597 620 597 620 0.96 17 22 5e-06 8.1e-05 22.4 0.8 1 23 625 648 625 648 0.93 18 22 0.00038 0.0061 16.4 0.2 1 23 653 676 653 676 0.92 19 22 5.5e-07 9e-06 25.4 1.9 1 23 681 704 681 704 0.96 20 22 4.1e-06 6.6e-05 22.6 3.2 1 23 709 732 709 732 0.96 21 22 8.5e-05 0.0014 18.5 0.8 1 23 737 760 737 760 0.94 22 22 8.3e-06 0.00014 21.7 1.5 1 23 765 788 765 788 0.96
Sequence Information
- Coding Sequence
- atgaaatttcctaCGAGTAAGATGGAATCGAACAATGTCTTCGATCCAACCgttagAATTAAAGAGGAAATAACGGATGAGTCGCTCATGGAGTATGATGATTACAACATAACGAACGAGACATCCGAAAGCAAAAATTTCCAATACTCGAGTGTTCCGCGGGAAAATTCTATCAATGAGATTCAAAAGTTTGAACAAAACCATGATTGCGAACTTGACGACGACCTGCACGAAGAATTTGAATGTCAGGACGTGAAGATAGACGTAAATTCATCAGTGATCAGGAAAATTGACGATAATTCTCAACAATACTCGCCAGACACGATTAAAATAGAAACTGCAGGAGTCGTGAAAGAAGAATTAGTTAATGACGATTCGGAAGATTTCAATGCAAGTGTCGAGGGCGAGCTCGGACAGAGACATAAAAATACCAAAGAGTTCAATCATGGAAAGCGCGAAAAGACATTTATGCGAAAGAGACCTCTCGAAGTCCACACAAATAGTGTTCATGATGATATCACTCACCCATGTcatatttgtggaaagactTTCAAGCGAAAGATACATCTCAAAGTCCACGtcaattcagtacataataaattgaaacCTTACAAATGTGATAAATGTCAAGTGTCATTCGCCTACAAAAATgttctcaaaaatcacattacTGCTGTGCACAGTAAAATAACTTATCCATGTCATGTTTGTGGAAAGTCATTCGGACAAAAAAGTTATCTCAAAATGCACATGAATAGAGCCCACAATAATTTTAAGCGTTACCAGTGTGACGATTGTCAAAAGTTATTCACTACAAAAGCACATCTAAAAATTCACGTCGATTCGGTGCACAGTGGAATCACCCATGGATGTGATACTTGTGGAAAATCATTCGGACTAAAGAGTCATTTAAAGGTCCACATCGAGTCGGTGCATCGTAAAATAAGGCAGACGTGCGAtaaatgccaaaagacattctcaaacaagagtaatctcaaaaagcacatcgattcggtgcataatggtgtttCACATGCATGCGacatatgccaaaagacattctcaaacaagagtaatctcaaaaagcacatcgattcggtgcataatggtgtttcacatgcatgcgatatatgccaaaagacattcgcTACGAAAGGTAATCTTAAAAACCACACCGaatcggtgcataatggtatttcacatgcatgtgaaatATGCGGAAATGTATTCAACCGAAGAGGTGATCTCAATAGGCATATCGATTCGTTGCACAATCGTGTTTCACATGGATGTGATgtttgtggaaagacattcactcAAAAAGGTCATCTCCAAATCcatatcgattcggtgcataataaaattactcatacatgtgatatatgccaaaagaaattctcagacaagagttatctcaaaaaacacatcgattcggtgcattataaaattatgcatcCATGCGATGAATGCCCAGAGACATTCTCAACCAAGGGTAATCTCAGAAATCATATCGGTTCGGTGCATAATCGTGTTTCACATGGATGTGATgtttgcggaaagacattctcTCAAAAAGgtcatctcaaaatccacatcgatgcgatgcataattgtgtcagacatgcatgcgatatatgcggtAATGTTTATAAACGAAGTGGCgatctcaaaactcacgtcCATGCGGTGCATCGTAAAATAAGGTATCGATGTGATGAATGTGGAAAATCATTCAGATGTAAGACTCATCTCCAAAGACACATCGATTCGTTACATCGTAAAATCACGCAttcatgcgatatatgccaaaagacattctcagacaagagttatctcaaaaaacacaccgatacggtgcataatggtgtcagacatgcatgcgatgtttgccaaaagacattctcaacCAAGGGTAATCTCAGAAATCATATCggttcggtgcataatggtgtcagacatgcatgcgatatatgcggtAATGTTTATAAACGAAGTGGCgatctcaaaactcacgtcCAAGCGGTGCATCGTAAAATAAGGTATCGATGTGATGAATGTGGAAAATCATTCAGAGGTAAGACTCATCTCCAAAGACACATCGATTCGTTACATCGTAAAATCACGCAttcatgcgatatatgccaaaagacattctcagacaagagttatctcaaaaaacacaccgatacggtgcataatggtgtcagaCATGCATGCGATGTTTGCCAAAAGTTATTCGCAGACAAGAGTTATCTCAAAAGAcatatcgattcggtgcatcgtAAAATCACGTtcacatgtgatatttgcggaaagaagttGAGCAAGAAGAGTAGTCTAAAAAAGCACATAGATAGTAAGCACAATGATGACACCCGCTCACATACAACTcaataa
- Protein Sequence
- MKFPTSKMESNNVFDPTVRIKEEITDESLMEYDDYNITNETSESKNFQYSSVPRENSINEIQKFEQNHDCELDDDLHEEFECQDVKIDVNSSVIRKIDDNSQQYSPDTIKIETAGVVKEELVNDDSEDFNASVEGELGQRHKNTKEFNHGKREKTFMRKRPLEVHTNSVHDDITHPCHICGKTFKRKIHLKVHVNSVHNKLKPYKCDKCQVSFAYKNVLKNHITAVHSKITYPCHVCGKSFGQKSYLKMHMNRAHNNFKRYQCDDCQKLFTTKAHLKIHVDSVHSGITHGCDTCGKSFGLKSHLKVHIESVHRKIRQTCDKCQKTFSNKSNLKKHIDSVHNGVSHACDICQKTFSNKSNLKKHIDSVHNGVSHACDICQKTFATKGNLKNHTESVHNGISHACEICGNVFNRRGDLNRHIDSLHNRVSHGCDVCGKTFTQKGHLQIHIDSVHNKITHTCDICQKKFSDKSYLKKHIDSVHYKIMHPCDECPETFSTKGNLRNHIGSVHNRVSHGCDVCGKTFSQKGHLKIHIDAMHNCVRHACDICGNVYKRSGDLKTHVHAVHRKIRYRCDECGKSFRCKTHLQRHIDSLHRKITHSCDICQKTFSDKSYLKKHTDTVHNGVRHACDVCQKTFSTKGNLRNHIGSVHNGVRHACDICGNVYKRSGDLKTHVQAVHRKIRYRCDECGKSFRGKTHLQRHIDSLHRKITHSCDICQKTFSDKSYLKKHTDTVHNGVRHACDVCQKLFADKSYLKRHIDSVHRKITFTCDICGKKLSKKSSLKKHIDSKHNDDTRSHTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -