Tpre001973.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
-
Assembly
GCA_000599845.3
Location
NW:214006-219128[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00028 0.0045 16.9 2.2 2 23 158 180 158 180 0.96
2 27 1.6e-06 2.6e-05 23.9 1.7 1 23 185 208 185 208 0.96
3 27 0.0017 0.028 14.4 1.3 1 23 213 236 213 236 0.95
4 27 2.6e-06 4.3e-05 23.2 1.0 1 23 241 264 241 264 0.94
5 27 1.2e-06 2e-05 24.3 1.8 1 23 269 292 269 292 0.96
6 27 0.00033 0.0054 16.6 0.2 2 23 298 320 297 320 0.94
7 27 3.8e-05 0.00062 19.6 1.2 1 23 325 348 325 348 0.96
8 27 1.2e-05 0.0002 21.1 1.8 1 23 353 376 353 376 0.95
9 27 0.00015 0.0024 17.7 0.3 1 23 381 404 381 404 0.97
10 27 8.2e-06 0.00013 21.7 0.7 1 23 409 432 409 432 0.96
11 27 0.00048 0.0078 16.1 1.7 1 23 437 460 437 460 0.90
12 27 1.9e-05 0.00031 20.5 1.4 3 23 467 488 465 488 0.95
13 27 2.9e-05 0.00047 20.0 0.9 1 23 493 516 493 516 0.93
14 27 8.2e-05 0.0013 18.5 1.7 1 23 681 704 681 704 0.93
15 27 2.9e-06 4.8e-05 23.1 0.5 1 23 709 732 709 732 0.96
16 27 9.8e-06 0.00016 21.4 3.2 1 23 737 760 737 760 0.92
17 27 1.2e-05 0.0002 21.2 1.1 1 23 765 788 765 788 0.95
18 27 9.9e-05 0.0016 18.3 2.8 1 23 793 816 793 816 0.95
19 27 4.8e-06 7.8e-05 22.4 0.3 1 23 821 844 821 844 0.97
20 27 1.6e-06 2.5e-05 23.9 0.6 1 23 849 872 849 872 0.95
21 27 2.5e-05 0.0004 20.2 1.8 1 23 877 900 877 900 0.95
22 27 0.00019 0.0032 17.4 3.1 1 23 905 928 905 928 0.94
23 27 3.5e-06 5.7e-05 22.8 0.9 1 23 933 956 933 956 0.96
24 27 3.4e-05 0.00056 19.7 0.5 1 23 961 984 961 984 0.96
25 27 1.2e-07 2e-06 27.4 1.5 1 23 989 1012 989 1012 0.96
26 27 1.4e-05 0.00022 21.0 2.4 1 23 1017 1040 1017 1040 0.95
27 27 7.5e-05 0.0012 18.6 0.8 1 23 1045 1068 1045 1068 0.96

Sequence Information

Coding Sequence
ATGGAATCCAGTGGTCTCTTCAGCTGTCCCATCagGGTGAAAAACGAACCCTGTGATACGTCTCTTATTGACAATGATGACAATGGAATCGATGAGGTGCCTGATGTTAAAAATTTCCGATTCTCCAGGGAATATTCCACGTTTCATGACGGTGACAAAAATCACGAACATAAATTTGACGAAATGCAAATTTTGTTTGAGTGCAAAGACGTCAAGCTTATTATGAATTCAttagaaaataagaaaactgACGATTATTCACCAAAATACTTGCGGAATAGGAAGTATAGCGACGACGAAACTCaaaatgcaattaaaatagaaactcTGGATGGAGTCAAAAAGgaaattgatttgaatttcgatTATGAATTTGCCGAGCATAATGAAAAGAGAAGTGATCAAAAGGATTTCAACGATAAACATAGACTCAAAACAAACATCGATTCTGTGCACACGGGTACCAAAAATACGTGCGATACGTGCAGAAAGACGTTCAAAAGAAAGGCCGATATGAAGAAGCATGTTCAATCAGTTCATAATGGTGTCACCCACTCATGTActatttgtggaaagacataTAAAAGGAAGGGTGATTTGACGAGGCACGTTCAATCAGCGCATGATGGTGTCACCCACTCGTGTACTATTTGcggaaaattgtttcaatataaaattagtCTTAAAagccacatcgattcagtgcacAATGGAACCAAACATGCATGTGACGTTTGcggcaagaaattttcatttaaaagtaatcTCCAAgcccacatcgattcgatgcaCAACGGGACGAAACATATGTGCAGTACATGTGGAAAGATGTTTACAAGGAAGGGTGATCTGACGAGGCATGTTCAAACAGCCCATAATGGTGTCACTTCctcgtgtgatatttgtgaaaagacattctcaaCAATTTGGTATCTCCAAActcacatcgattcgatgcaCAATGGGACCAAATATGCATGTGACGTTTGTGGCAAgaaatttgcatttaaatGTAATCTCCAAACCCACATCGCatcgatgcataatggtgtcacccactcatgtaatatatgtgtcaagaaattttcaacaaaatataatCTCCAAGCCCACATAGATTCAATGCACAATGGGATTACTTACTCATGTGATTTTTGCGGCAAGACGTTTGCATGGAAGAGTGATCTGTCGAGGCATGTTCAATCAgcgcataatggtgtcacctACTCATGTGATACTTGCGGAAAGgcatttattcaaaaatataaactcaaaatccacatcgaatCGAGGCACAATGGGATTACTCACTCATGTGATAGTTGCGGCGAgacattttcatcgaaaaataatctcaaaataCACTTTGTTTCGATGCATAAACATGCCCCTCTAGCATGTGACtattgtggaaaaaaatttaaatatccaTCTGGTCTCCATAAGCATGTTAAATCGTCGCATGATGGTACCACCCATTCATGCAAGACATGCGGAAAGACGTTTGGAAAAAGAGCAAATCTCAAAGCTCATATCGATCTGGCTCATCGCACCCGCATTatGGAATCTAGTGATGTACTCAATTCTGTTGTCAgGGTAAAAGAGGAGCCTCGTGACGAATCGCTCATTGAAAACGATTACCATACCGTAGACGAGAAACCCGATCTGAAAAACTTTCAACTCTTGTCGTTTCCGAAAAACAATTCGACCCATACGCTTCGAGAACTTAATGACGAAATGGAAATAGTTTTTGAAAGTGAAGACGTCAAGCCTAACATTGATTTATTGACAATCCCGAAAATTGGTCaggattttcaaaatcacttGCAGAAAGTGAAAGACAGTGACGGTTATAAAACTCAAAACTTAATTAAAATCGAGGAAATGAAACAAGAAATTATCAATGACGTTGCAGaacaatttaattcaaatctCGATTGTGAAATTGTCgagcaaaatcaaaaaaagagaatttcgaaaaaatctgaCCAGCAACATGAGATCCAAACTCAGATTGATACGGTGCATAGTGATGGTATCCACGCGTGTGAAACATGtggaaaaacatttaaatataaaagtaatgtCAAAACTCACGttgattcggtgcataaaaaaaaaacttatatatgTGATAATTGTGGAAAGTCATTTACTCTGAAAAGTAGTTTGAAAaaccacatcgattcagtgcacAATGGGACTAAACATACGTGCAGtacatgtggaaagacatttacGCATAAAAGTTATCTTAAAATACACATCGATGGAatacataatggtatcactCACTCCTGTGATAGTTGCGGCAAGACATTTACTCAGAAAGGTagtctcaaaatccacatcgattctGTGCACAATGGAACCAAATATGCATGTGACGTTTGtggcaagaaattttcatttaaatgtaatCTCCAAACCCACACCGAATCGATGCATAATGGGATTACTTactcatgtgatatttgcggaaagacgtATCAAAGAAAGGGTGATCTGATGAGGCACGTTCAATCAgcgcataatggtgtcacctattcatgtgatatttgtggaaaaacattcacaaaaaaaagttatctcaGAATCCACGTCGATTCcgtgcacaatggtgtcactcACTCATGTGATAGTTGCGGCAAGACATTTACTCAGAGAGGTAgtctcaaaacccacatcgattcgatgcaCAATGGAACCAAACATGCATGTGACGtttgcgacaagaaattttcattcaaatgtaATCTCCAAgcccacatcgattcgatgcaCAATGGGATTTTTCactcatgtgatatttgtggaaagacgTATAAAAGTAAGGGTGATCTGATGAGGCACGTTCAATCAGCGCATAATGATGTCACCTattcatgtgatatttgtggaaaaacATTCTCAAGAAATTGGTATCGCCaaacccacatcgattcgatcCACAATGGTGTCAAACATGTATGCGATATTTGCGGCAAAACGTTTAAAAGGAAGAGTGATCTGACGAAGCATGTTCAATCAgcgcataatggtgtcacccactcatgtgatatttgtggaaagacattctcaaGACATTGGTATCTCCaaacccacatcgattcgatccacaatggtgtcaaacatgtatgcgatatttgcggaaaggcGTATAAAGGAAAGAGTAAACTGTATAAGCACGTTCAATCCGCGCACAGTGGTGTCACCCATTCATGA
Protein Sequence
MESSGLFSCPIRVKNEPCDTSLIDNDDNGIDEVPDVKNFRFSREYSTFHDGDKNHEHKFDEMQILFECKDVKLIMNSLENKKTDDYSPKYLRNRKYSDDETQNAIKIETLDGVKKEIDLNFDYEFAEHNEKRSDQKDFNDKHRLKTNIDSVHTGTKNTCDTCRKTFKRKADMKKHVQSVHNGVTHSCTICGKTYKRKGDLTRHVQSAHDGVTHSCTICGKLFQYKISLKSHIDSVHNGTKHACDVCGKKFSFKSNLQAHIDSMHNGTKHMCSTCGKMFTRKGDLTRHVQTAHNGVTSSCDICEKTFSTIWYLQTHIDSMHNGTKYACDVCGKKFAFKCNLQTHIASMHNGVTHSCNICVKKFSTKYNLQAHIDSMHNGITYSCDFCGKTFAWKSDLSRHVQSAHNGVTYSCDTCGKAFIQKYKLKIHIESRHNGITHSCDSCGETFSSKNNLKIHFVSMHKHAPLACDYCGKKFKYPSGLHKHVKSSHDGTTHSCKTCGKTFGKRANLKAHIDLAHRTRIMESSDVLNSVVRVKEEPRDESLIENDYHTVDEKPDLKNFQLLSFPKNNSTHTLRELNDEMEIVFESEDVKPNIDLLTIPKIGQDFQNHLQKVKDSDGYKTQNLIKIEEMKQEIINDVAEQFNSNLDCEIVEQNQKKRISKKSDQQHEIQTQIDTVHSDGIHACETCGKTFKYKSNVKTHVDSVHKKKTYICDNCGKSFTLKSSLKNHIDSVHNGTKHTCSTCGKTFTHKSYLKIHIDGIHNGITHSCDSCGKTFTQKGSLKIHIDSVHNGTKYACDVCGKKFSFKCNLQTHTESMHNGITYSCDICGKTYQRKGDLMRHVQSAHNGVTYSCDICGKTFTKKSYLRIHVDSVHNGVTHSCDSCGKTFTQRGSLKTHIDSMHNGTKHACDVCDKKFSFKCNLQAHIDSMHNGIFHSCDICGKTYKSKGDLMRHVQSAHNDVTYSCDICGKTFSRNWYRQTHIDSIHNGVKHVCDICGKTFKRKSDLTKHVQSAHNGVTHSCDICGKTFSRHWYLQTHIDSIHNGVKHVCDICGKAYKGKSKLYKHVQSAHSGVTHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01484872;
90% Identity
iTF_01484872;
80% Identity
iTF_01484872;