Tpre009504.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:258136-264123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0036 0.059 13.4 0.1 1 23 30 53 30 53 0.97 2 30 0.00029 0.0048 16.8 2.3 1 23 59 82 59 82 0.95 3 30 2.9e-05 0.00048 19.9 1.4 1 23 88 111 88 111 0.96 4 30 0.00012 0.0019 18.0 4.0 1 23 117 140 117 140 0.97 5 30 0.0051 0.083 12.9 0.6 1 23 146 169 146 169 0.95 6 30 6.6e-06 0.00011 22.0 4.6 1 23 196 219 196 219 0.97 7 30 6.2e-06 0.0001 22.1 0.8 1 23 225 248 225 248 0.97 8 30 0.0022 0.035 14.1 1.7 1 23 254 277 254 277 0.97 9 30 3.1e-05 0.00051 19.9 1.3 1 23 283 306 283 306 0.98 10 30 2e-05 0.00032 20.5 1.9 1 23 312 335 312 335 0.98 11 30 5.4e-06 8.7e-05 22.3 1.1 1 23 341 364 341 364 0.96 12 30 0.00063 0.01 15.8 0.7 1 23 370 393 370 393 0.97 13 30 9.4e-06 0.00015 21.5 1.1 1 23 399 422 399 422 0.97 14 30 2.4e-06 4e-05 23.3 1.1 1 23 428 451 428 451 0.97 15 30 0.0013 0.022 14.7 0.6 1 23 457 480 457 480 0.97 16 30 3.3e-05 0.00055 19.8 0.7 3 23 488 509 486 509 0.96 17 30 1.1e-06 1.8e-05 24.4 0.9 2 23 710 732 709 732 0.96 18 30 1.4e-07 2.3e-06 27.3 0.9 1 23 738 761 738 761 0.97 19 30 4.3e-05 0.0007 19.4 0.5 2 23 768 790 767 790 0.94 20 30 0.00014 0.0023 17.8 0.2 1 23 796 819 796 819 0.95 21 30 1.3e-05 0.00021 21.1 0.8 1 23 825 848 825 848 0.95 22 30 0.0012 0.019 14.9 4.9 1 23 854 877 854 877 0.97 23 30 3.4e-06 5.5e-05 22.9 3.3 1 23 883 906 883 906 0.96 24 30 0.00043 0.0071 16.3 1.4 1 23 912 935 912 935 0.96 25 30 0.0035 0.057 13.4 0.3 1 23 941 964 941 964 0.94 26 30 0.0011 0.019 14.9 6.9 1 23 970 993 970 993 0.95 27 30 1.2e-06 1.9e-05 24.3 1.9 1 23 999 1022 999 1022 0.94 28 30 9.8e-06 0.00016 21.4 1.7 1 23 1028 1051 1028 1051 0.97 29 30 2.8e-05 0.00046 20.0 0.8 1 23 1057 1080 1057 1080 0.95 30 30 0.0013 0.021 14.7 1.2 1 23 1086 1109 1086 1109 0.98
Sequence Information
- Coding Sequence
- atggataaaagtgaaaagaaatccGAAGAAGTtgtctcggaaaataattcaagtgaacatgACATTGATGTTTCAGAAGATAAACaatacatttgtgatatttgtcaagaggcatttacactagaatcaagtatgtTATCACATCGAAATAcaattcataatgaaaaaaaagattttgcatgtgatagctgcgataaaaaatttgagttccgaagtcatttaagtagacaccaaatatcggtacacaaaaACCGCAACGATTTTACATGCGacatgtgcgagaaaaaatttgtgaagaaatcaagtttgtttgcgcatcaaaaattaatacataaagATGGTAAAAATTACTCCTGtaaaaaatgcgagaagaaatttgaaaataaatcaactttactcaagcacaaaaaaatattccacgaagtctTCAAAGATTTCTTATGTGAAAATTGTgcaaagagatttggaaataaacagagtttgctcttgcacataaagaaaGTACACAACAAGCCTGAGgagaaaattggaaaaaaatttaaattgatgaAACGCCGTAAGACAGTCCACggagatcgcaaagattacacatgtgacaaatgccataagaaattcataaatcgaagcaatttacaaaaacataaaaaaatagtccacgaaggtcgcagagattatgcctgcaacaattgcgagaagaaatttacacaaaattcGAGTTTGCTCATTCACctaaaaacagtacacgatggtcgtaaagattacgcatgcaacatgtgcgagaagaaatttgggaaaaaatgGGATTTGCACATACACCGAAAGTCggtgcacgaaggtcgaaaagatttcgaatgtgacaagtgtgagaggaaatttacgcaaaaaccgagtttgctctaccaccaaaggacagcacacgaaggtcgtaaagactATACGTGCAAAAAGTGCgaacagaaatttggacaaaactCGGATTTATTgaagcatcaaaagacagtgcatgaaggtcgcaaagattacgcatgtgaaaagtgcgagaagaaatttggggatcgAAGCAATTTGAAAAGACACCgaaaaatagttcacgaaggatgcaaagattttgcttgcaacaattgcgaaatgaaatttggAACTAAAAGAGATTTGTTCGTGCACCAAAACACAGTCCATGAAggacgaaaagattacgcatgtgaaaaatgcgagaagaaatttagccGTAAATGGAATTTACTCGACCATCAAAAAAGGGTACACAAATGTCGCAaggatttcgcatgtgatatttgtgagaaaaaatttacacaaaaatcgagtttgctttatcaccaaaggacagtacacgaacgtcgcaaagattacatatgcgacaagtgtgaaaagaaatttggatataaaaattctttgtttttGCATGCAAGAATAGTTCATGAAGGACGCAAAGATTtggcatgcgacaaatgcgagaagaaatttggacgaaaaccgaatttgctcagacaccaaaaaacagtacacaaAATTTTCTCGGTAGTGAAGTTCCGAAGGTTGCTGATACAGCTCTGCACTTTCCTTTCAAAAACTAAGAAGCAAGAGGAACCGTCCGATGATTGGTCAGGTGTAGGCGACAATCCTGACGATCGAGTGGACTCGTGCACAGtcgaaaactttgaaaatcaattaacGATAAATGAACCATCGGCCAATAACACGAATGAGTCTATGCCATTACAGGAGGGGTTAGACGGGATAATTTTGGTGGATTTCGAtagcaaaaatgtaaaaaatgaagttgagtTTTCATCTACATCCATCTGCAAAACTGTGAATCAAATTTGTCAACCTATTGTGAAATTAGAAAACGAAACTCAGACCCATGACATCAATGACGATATTGGCATCGATTTCGAGTGCAGGGATGTTAAGCTTGAAGTAAAACCCTCATTGACAAACATCAGTCCATCTACTGTGAAAACAGAAAATCAAAATCGAACAAATcactcgaaagaaaaaagtttgataattttaataaaaaaaggattcgaTTACGTTAATAACTGTCAATTTATCAGTGGAGAAGCAAATATGAAACCGACTCACAAGGGCATTGGAGCacttgaatgtaaaatttgcaaCAGGTCATttgcaaacaaacaaaacttaaaaaagCACATAAGTACAGTACATAAGCGGAGCACaccctttgaatgtaagatttgtaacaaatcattTGTACAAAAGAGTAGCCTCAAAAGGCACATAGTTACAGTACATAAGCGGAGCAAAACCTCTGAATGTaagatttgtaacaaattatttggacaaaagagTAGCCTCAAAAGGCACATAATGGCAGTACATGAgaggagcaaaccctttgaatgtgatatttgtcagaaattatttggacgaaaaagtgAACTTGAATCTCACATAAGTTTAGTACATCTTCGTAGTAAagcctttgaatgtgatatttgtcacaaatcatttggactatcAAGTAACCTCAAACGTCATGTCAACGCAGTACACGATCGTAGCAAAACCTTtgagtgtaaaatttgtcTTAATTCATTTAGTCAAAAACATCATCTCAAATATCACATAAATTCCGTACACAATCatagcaaaccttttgaatgtgatatttgtcacaaatcatttgggcaCAAAAGTCAACTCACTACTCACATGAAGGCGGTACATAAACGCGAAAAACCTTTCGattgtgagatttgtcataaatcatttggatatcagaATGTACTGAAAAGACATAGAGCAACAGCTCATAATCTTGGAAatccctttgaatgtgatatttgtcacaaatcatttggactattAGGTGTCCTCAAACGTCATGTCAACGCAGTACACAATCGTAGCAAAAcctttgagtgtgatatttgtcacaaattatttagTCAAAAACATCATCTCAAATATCACATAAATTTCGTACACAATTatagcaaaccttttgaatgtgatatttgtcacaaatcatttagataCAAAAGTCAACTCACTACTCACATGGAGGCAGTTCATAAACGTGAAAAACCTTTCGattgtgagatttgtcatgaATCATTTGGAAACAAGAGTGATCTTAAAAGGCACAAGATGACTGTACATGATAGAAGAAAtacctttgaatgtgacatttgtcacaaatcatttggatataagAGTGTCCTCAATagacacataaatgcagtacataatcggatcaaaccttttgaatgtgaaatttgtcacaaattatttggatacAAAAATGTACTCAAAAACCATATAATGACGATACATAATGAAAGCCAACCTCAGGAGTGTGAAGTTTATTCGATGCATTTTGGACGCAACGAAGACTTTTGCAATCAGTCGGGTTACGCTATGTAA
- Protein Sequence
- MDKSEKKSEEVVSENNSSEHDIDVSEDKQYICDICQEAFTLESSMLSHRNTIHNEKKDFACDSCDKKFEFRSHLSRHQISVHKNRNDFTCDMCEKKFVKKSSLFAHQKLIHKDGKNYSCKKCEKKFENKSTLLKHKKIFHEVFKDFLCENCAKRFGNKQSLLLHIKKVHNKPEEKIGKKFKLMKRRKTVHGDRKDYTCDKCHKKFINRSNLQKHKKIVHEGRRDYACNNCEKKFTQNSSLLIHLKTVHDGRKDYACNMCEKKFGKKWDLHIHRKSVHEGRKDFECDKCERKFTQKPSLLYHQRTAHEGRKDYTCKKCEQKFGQNSDLLKHQKTVHEGRKDYACEKCEKKFGDRSNLKRHRKIVHEGCKDFACNNCEMKFGTKRDLFVHQNTVHEGRKDYACEKCEKKFSRKWNLLDHQKRVHKCRKDFACDICEKKFTQKSSLLYHQRTVHERRKDYICDKCEKKFGYKNSLFLHARIVHEGRKDLACDKCEKKFGRKPNLLRHQKTVHKIFSVVKFRRLLIQLCTFLSKTKKQEEPSDDWSGVGDNPDDRVDSCTVENFENQLTINEPSANNTNESMPLQEGLDGIILVDFDSKNVKNEVEFSSTSICKTVNQICQPIVKLENETQTHDINDDIGIDFECRDVKLEVKPSLTNISPSTVKTENQNRTNHSKEKSLIILIKKGFDYVNNCQFISGEANMKPTHKGIGALECKICNRSFANKQNLKKHISTVHKRSTPFECKICNKSFVQKSSLKRHIVTVHKRSKTSECKICNKLFGQKSSLKRHIMAVHERSKPFECDICQKLFGRKSELESHISLVHLRSKAFECDICHKSFGLSSNLKRHVNAVHDRSKTFECKICLNSFSQKHHLKYHINSVHNHSKPFECDICHKSFGHKSQLTTHMKAVHKREKPFDCEICHKSFGYQNVLKRHRATAHNLGNPFECDICHKSFGLLGVLKRHVNAVHNRSKTFECDICHKLFSQKHHLKYHINFVHNYSKPFECDICHKSFRYKSQLTTHMEAVHKREKPFDCEICHESFGNKSDLKRHKMTVHDRRNTFECDICHKSFGYKSVLNRHINAVHNRIKPFECEICHKLFGYKNVLKNHIMTIHNESQPQECEVYSMHFGRNEDFCNQSGYAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -