Tpre010852.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:657524-659309[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.1 5.3e+02 0.2 3.6 18 40 164 183 149 192 0.66 2 11 0.021 1.6 8.3 2.9 18 44 192 215 181 215 0.88 3 11 0.045 3.4 7.3 1.5 19 44 221 243 216 243 0.92 4 11 0.053 3.9 7.1 0.9 19 44 249 271 245 271 0.93 5 11 0.52 39 3.9 2.6 19 43 277 298 274 304 0.91 6 11 0.014 1 8.9 0.5 19 43 305 326 300 327 0.94 7 11 0.037 2.8 7.5 1.0 19 44 333 355 330 355 0.93 8 11 0.0065 0.48 10.0 1.0 19 43 361 382 359 383 0.94 9 11 1.6 1.2e+02 2.3 0.4 19 43 389 410 386 411 0.84 10 11 0.011 0.85 9.2 1.5 19 44 417 439 414 439 0.92 11 11 0.055 4.1 7.0 0.5 19 44 445 467 442 467 0.92
Sequence Information
- Coding Sequence
- ATGGAATCGAGTAGTTTCTTCAACTGTCCTGttagAGTAAAAGACGAACCTCGTGATGAGCTTCtcaatgataatgattataaaataattgacacGACACCCGTCactcaaaatattaaatacgaAAGGTTTTGgcaagaaaattcaacccaAGAGCTTCAAAAACATGacgaaaatcatgaaaatgaacttGACGACCTGGAAATCGAAATGGAATGTACAGACATGAAGCCCAATTTATTGGTGGTTGCGAAAATTGAAGATCATTCTCCAAATCAATGGCCGAATAGTGATGAGTATGAAACTggaagcaaaattaaattagaaacTGTCGGGACAgtgaagaaagaaattttaagcGAAGAAACTGATTTGAATTTCGGACGTGCACTCAGCGAGCAAAATAAACAAGAAACTGTTTCAAAAGAGCTGAACAATGAAAATAGGCTCAAAACTCACAATGATACTacgcataataaaatcacacatgattgtgatatttgcggaaaatcATTCAGACAAAAAGGTCATCTAAACGTCCACATCCAGTCGGTGCATCGTAAAATAAGGCATGCATGCAACATATGCCAAAATACGTTCTCAGAGAAGAAAAGTCTCAGCaatcacatcgattcggtgcataatgaaGTTAggcatgcatgtgatatttgcgaaaagacattcacacagaagagtcatctcaaaatccacatcgagtCGGTGCATCGTAAAATAAGGCACGCTTGCGatgtatgccaaaagacattctcagatAAGAGttatctcaaaactcacatcaattcggtgcataatggtgtttCACATGCGTGTAATTTATGCCCGAAGACATGCTCAGACAAGAGTAGtctcaagaaacacatcgattcaatacatcataaaattactcatccatgtgataaatgccaaaagacattctcagacaAGAGTAATCTTCAAAAACACATCGAATCGATACATCATAAAATTACGCATCCATGTGATGAATGCCAAAAGACATACTCAGACAAGagaaatctcaaaaaacacatcgcttcggtgcataatggtgtcccATATGCGTGTGACATTTGTGGGAAGACATTcttacaaaaaagtaatctcaaaactcacatcgaATCGATACATCATAAAATTACGCATCCATGTGATATGTGTACAAAGAAATTTACTGCGAAAAGTAGTCTTAAAGTCCATATCGATGCGGAGCACAATGGAATCACCTATTCATGtgatttatgtgaaaaaaaatataaataccaAACTCAACTCAATAGACATGTCAAATCGTCGCATAATGGTATAACTTATGCATGCAAGacatgcggaaagacattcggCCAGAAAAGAAATCTTAAAGCCCACATCGATATGGCTCATAATTCACGCATAACGACCTaa
- Protein Sequence
- MESSSFFNCPVRVKDEPRDELLNDNDYKIIDTTPVTQNIKYERFWQENSTQELQKHDENHENELDDLEIEMECTDMKPNLLVVAKIEDHSPNQWPNSDEYETGSKIKLETVGTVKKEILSEETDLNFGRALSEQNKQETVSKELNNENRLKTHNDTTHNKITHDCDICGKSFRQKGHLNVHIQSVHRKIRHACNICQNTFSEKKSLSNHIDSVHNEVRHACDICEKTFTQKSHLKIHIESVHRKIRHACDVCQKTFSDKSYLKTHINSVHNGVSHACNLCPKTCSDKSSLKKHIDSIHHKITHPCDKCQKTFSDKSNLQKHIESIHHKITHPCDECQKTYSDKRNLKKHIASVHNGVPYACDICGKTFLQKSNLKTHIESIHHKITHPCDMCTKKFTAKSSLKVHIDAEHNGITYSCDLCEKKYKYQTQLNRHVKSSHNGITYACKTCGKTFGQKRNLKAHIDMAHNSRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485196;
- 90% Identity
- iTF_01485196;
- 80% Identity
- iTF_01485196;