Tpre001860.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:261103-263468[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.19 11.2 0.3 19 43 189 210 186 211 0.93 2 11 6.3e-05 0.0047 16.4 3.0 1 44 200 239 200 239 0.91 3 11 0.067 5 6.7 0.2 19 44 245 267 243 267 0.88 4 11 0.32 24 4.5 0.2 18 29 272 283 269 298 0.80 5 11 0.13 9.3 5.9 0.5 18 38 300 317 290 323 0.77 6 11 2.1 1.6e+02 1.9 6.7 18 43 328 350 314 355 0.75 7 11 0.11 8.1 6.0 4.8 13 44 351 379 341 379 0.86 8 11 3.1 2.3e+02 1.4 3.9 15 43 381 406 378 407 0.82 9 11 0.025 1.9 8.1 1.4 6 29 401 423 399 438 0.72 10 11 1.6 1.2e+02 2.3 0.3 18 39 440 458 437 463 0.72 11 11 0.13 9.9 5.8 5.7 17 43 467 490 453 491 0.82
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGATGTACTTGATTCTGCTGTCAGAGTCAAAGAGGAGATGAATGATGTGTCTATTATTAGAAATAACTGTGAAATGATTGACGAGAAATCAAATCTCCAATGTCCAAAGATCCAAAACTTCCCAATCATACCGTTTCGGCAAGAAAATTCCAACCATAAGCTTCGAAAATGTGACACTAAACTCGAAAGAAAACATGACAAGGACGTGGAGATAGTTTTCGAATGCGAGGACGTCAAAccaaatattaatttacaaacagctaaaaaaatgaatgattacTCTACAAATTCCTTGCGGAGTGTAAAAGAGGGCAACAGTTATAAAACGCGAAACTTAGTAAAGAAAGAGGCCACGCaagaaataaaacaagaaatttttGGTGACACATCAGGGACATCGAATTTGAACTTCGACGAACAAAAGCTTAAAATACATATCAGTTCGGTTAATAACGATGCACGCCATCTACGTAAAAtaagcggaaaaaaatttccacatGAAAGCAGTCTGAGAAGGCATGTCAAATCATTTCATCACTGTATTACTTACTCgtgtgatatatgcggaaagacgTATAAAGGAAAGAGTGAACTGTATAAGCACGTTCAATCAGTACATGATGGTGTCACCCACTCATGTAATATTTGCGGCAAGATGTTTAAAAGAAAGATTGGTCTGACGAGGCACGTTAAATCAgcgcataatggtgtcacgtacttatgtgatatttgcggaaaatcatttacatataaaattagtCTCAAATACCACATCGATTCTGTGCACAATGGAAtcaaacatgcatgtgatatttgcgaaaagacattctcagCCAAATGGTATATCAAAATCCACATCAATGCGGTGCACAATAGGATTACTTACTCATGTGATTTTTGCGGCAAGACTCTTAGAAGAAAGGGCGATCTAAAGAAGCATGTTGAATACACGCATAATGGTGTCATCCactcatgtgatatttgtggaaagacatttactCGAAAATGTAaactcaaaatccacatcgattccGTGCACAATGGGACCAAACATGCATGTGACCTTTGcggcaagaaattttcatttaaatgtaatCTCCAAACTCATATCGATTCGATGCACAATGGGACTAAACATACGTGCAGTACATGTGGAAAGACGTTTCCACATAAACGTAGTCTTATAAAACACGTCGATGCGGCGCACAAAGGTAtcaaacatgcatgtgatatatgtggcaagaaattttcacgaaaagatgttctcaaaatccacatcgatggaatacataatggtgtcacccaaacatgtgatatttgcggaaaatcATTTCCATCTAAAATTagtcttaaaaaacacatcgattgggtgcacaatggtgtcaaacATGCGTGTGAAAAATGtggcaaaaaatattcacgaaaagatcatctcaaaactcacatcgaTTTGAAACATAatgttgttttaaaataa
- Protein Sequence
- MESSDVLDSAVRVKEEMNDVSIIRNNCEMIDEKSNLQCPKIQNFPIIPFRQENSNHKLRKCDTKLERKHDKDVEIVFECEDVKPNINLQTAKKMNDYSTNSLRSVKEGNSYKTRNLVKKEATQEIKQEIFGDTSGTSNLNFDEQKLKIHISSVNNDARHLRKISGKKFPHESSLRRHVKSFHHCITYSCDICGKTYKGKSELYKHVQSVHDGVTHSCNICGKMFKRKIGLTRHVKSAHNGVTYLCDICGKSFTYKISLKYHIDSVHNGIKHACDICEKTFSAKWYIKIHINAVHNRITYSCDFCGKTLRRKGDLKKHVEYTHNGVIHSCDICGKTFTRKCKLKIHIDSVHNGTKHACDLCGKKFSFKCNLQTHIDSMHNGTKHTCSTCGKTFPHKRSLIKHVDAAHKGIKHACDICGKKFSRKDVLKIHIDGIHNGVTQTCDICGKSFPSKISLKKHIDWVHNGVKHACEKCGKKYSRKDHLKTHIDLKHNVVLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485214;
- 90% Identity
- iTF_01485214;
- 80% Identity
- iTF_01485214;