Tpre012046.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:659037-661562[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 2.3e+02 1.4 0.4 35 44 143 152 139 152 0.88 2 13 0.039 2.9 7.5 4.3 18 44 157 180 155 180 0.95 3 13 7 5.2e+02 0.3 7.2 18 44 185 208 183 208 0.88 4 13 0.099 7.4 6.2 0.3 18 43 241 263 239 268 0.87 5 13 0.22 16 5.1 1.5 19 43 270 291 263 292 0.79 6 13 0.74 55 3.4 0.8 18 44 297 320 295 320 0.88 7 13 0.0033 0.24 10.9 1.2 18 44 325 348 322 348 0.92 8 13 0.00072 0.053 13.0 0.9 19 44 354 376 350 376 0.96 9 13 0.098 7.3 6.2 0.3 18 43 381 403 379 408 0.87 10 13 0.22 17 5.1 1.5 19 43 410 431 403 432 0.79 11 13 0.3 23 4.6 1.0 18 44 437 460 435 460 0.92 12 13 0.0036 0.26 10.8 1.2 18 44 465 488 463 488 0.92 13 13 0.00081 0.06 12.9 1.0 19 43 494 515 490 516 0.95
Sequence Information
- Coding Sequence
- ATGGATACCAGTCCTATATTCAACTGTGCGgtcagggTTAAAGATGAACCTATAGATGTATCgctcattgaaaataattgtaatatcaTTGACAAGATACTCGATACCCAAAATAGTCAGTTTCCAAGATTTTCgcgagaaaattcaGCTCGTATGACTCacgaaaatcatgaaaattacgTATTCGCGGACAATGACTTGGCAATAGAACTCGAATGCCAAGACGTAAAGCCCGGCATGAATTTATTAGTAGTTAAGAAAATCGAAGACGACGATTCAAGTCAGTTGCAAGATATGAATTATAGCAATTATTATCaaactcaaaagaaaattaaaacagAAGCTGTGGACGAAGTAAAAAaggaattgaatttaaattatgaacTCAGCAATGAacgtaaaaaaacatgtaCTCCAAGAAGTTATCTGAATCGTCACCTACGATCATCGCACCAAGGTATCACTCACACATGTGATACATGCGGAAAGACATACAATCATAAGAGTGCTCTCAATAGGCACATACAATCATCGCACCAAGGTATCACCCACACATGTGATACATGCGGAAAGACATACAATCAAAAGTGTCATCTCAATAGGCACGTACGATCATCGCACCAAGGTATCACCCACACGTGTGATACATGCGGCACGACGTTTACTCTAAAAGCTGCTCTTGAAAGGCACGTAAAATCATTGCACCAAGGTATCACCTACAACTGCGATgcatgcggaaagaaattttcacaaaaaaacaCTCTCCGAATTCATATGgatgcagtacataataaaatcaccCATCCTTGCAGTatatgtggaaagaaattctcagATAAGAGATATATCACAAGGcatatcgattcggtgcaccAAGGTATCACCCACACGTGTGATACATGCGGTACGACGTTTACTCGAAAAGCTGATCTTAAAAGTCACGTAAAATCATTGCACCAAGGTATCACCTACACCTGCGATgcatgcggaaagaaattttcacataaaaaaaatctccgaACCCATATGgatgcagtacataataaaatcaccCATCCTTGCAgtatttgtggaaagaaattctcagATAAGAGTAATGTCAGAAGGCACGTACAATCATCGCACCAAGGTATCACCTACAACTGCGATgcatgcggaaagaaattttcacaaaaaaacaCTCTCCGAATTCATATGgatgcagtacataataaaatcaccCATCCTTGCAGTatatgtggaaagaaattctcagATAAGAGATATATCACAAGGCATATCGATTCAGTGCACCAAGGTATCACCCACACGTGTGATACATGCGGTACGACGTTTACTCGAAAAGCTGATCTTAAAAGGCACGTAAAATCATTGCACCAAGGTATCACCTACACCTGCGATgcatgcggaaaaaaattttcacataaaaaaaatctccgaACCCATATGgatgcagtacataataaaatcaccCATCCTTGCAgtatttgtggaaagaaattctcagATAAGAGTAATGTCAGAAGGCACGTACGATCATCGCATGAAGGTATCACCCACCCATGTGATACCTACGGAAAGACATATAATCAAAAGGGTAGTCTCGATAGTCACATACGATCATCGCACTAA
- Protein Sequence
- MDTSPIFNCAVRVKDEPIDVSLIENNCNIIDKILDTQNSQFPRFSRENSARMTHENHENYVFADNDLAIELECQDVKPGMNLLVVKKIEDDDSSQLQDMNYSNYYQTQKKIKTEAVDEVKKELNLNYELSNERKKTCTPRSYLNRHLRSSHQGITHTCDTCGKTYNHKSALNRHIQSSHQGITHTCDTCGKTYNQKCHLNRHVRSSHQGITHTCDTCGTTFTLKAALERHVKSLHQGITYNCDACGKKFSQKNTLRIHMDAVHNKITHPCSICGKKFSDKRYITRHIDSVHQGITHTCDTCGTTFTRKADLKSHVKSLHQGITYTCDACGKKFSHKKNLRTHMDAVHNKITHPCSICGKKFSDKSNVRRHVQSSHQGITYNCDACGKKFSQKNTLRIHMDAVHNKITHPCSICGKKFSDKRYITRHIDSVHQGITHTCDTCGTTFTRKADLKRHVKSLHQGITYTCDACGKKFSHKKNLRTHMDAVHNKITHPCSICGKKFSDKSNVRRHVRSSHEGITHPCDTYGKTYNQKGSLDSHIRSSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485100;
- 90% Identity
- iTF_01485100;
- 80% Identity
- iTF_01485100;