Tpre005879.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1000104-1002872[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.32 24 4.5 1.4 18 43 273 295 268 296 0.90 2 10 0.33 25 4.5 3.6 2 43 286 324 285 325 0.77 3 10 0.001 0.078 12.5 2.5 3 43 316 353 314 357 0.88 4 10 0.00055 0.041 13.4 2.5 2 44 344 383 343 383 0.90 5 10 0.07 5.2 6.7 1.9 1 42 372 410 372 415 0.84 6 10 0.16 12 5.6 0.9 6 43 406 440 401 440 0.79 7 10 0.0046 0.34 10.5 1.5 6 38 435 464 434 464 0.89 8 10 0.0029 0.21 11.1 2.0 3 43 461 498 459 501 0.90 9 10 0.56 42 3.8 3.1 3 40 490 524 488 531 0.77 10 10 0.74 55 3.4 5.9 6 43 522 556 516 557 0.85
Sequence Information
- Coding Sequence
- ATGGAAAGCAGGAAGGATTTAGTTAGTGTTGAAGGGGAGCCTCGCGACAATTGGGAAGATGTAGCCAACGAGAGTGTTGATCCGGGGTTCTTGGTGAAAACTGAAATCTCTGAAGAATCATCGACGAATGAGTCATCAGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGGAGGAAAATCCGGGGTTCTCgGTGAAAACTGAAAACTCTGAAGAATCATCGTCGAATGAGTCATCGGATGAAATTTCCATCGAATTGGAGAccgaaaatgtaaaacttgaaCATAAGCCCTCATCAACGAACATCTGCCAAACTACTGTCAAGGAAGAAAATCCGGGGTTCTCGGTGAAATCTGAAAACTCTGATGAATCATCGACGAGTGAATCATCGgctaATCCCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTGGATCCGGGGATCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCGGCCAAACTactagagagaaagaaaatccAACAAATAACTTAAATGGGACAAAActcacaattttaattaaaaaaggattCAATTACGATagtaattgtaaatttacCAGAGAAGAAGCGACTTCAACGAAACAAATGAAAACGACACACAAGGGCAATGGACCAcacgaatgtgaaatttgtcataaatcgtTTAGAAAACCAAGTGTACTTAAAGCGCACGTGAATCGagtacatgataaaatcaAACCTTTccagtgtgaaatttgtcacaaatcatttggacgaaaatatGACCTCAAAAATCACgtgaatgcagtacataatcagagcaaaccctttgagtgtaatatttgtcatgAATCATTTACACGAAAAgataatctcaaaattcacatcagTATAGTCCATGAACGcagcaaaccttttgagtgtCAGTTTTGTCACAAAGCATTTGCACTAAAAAGTCGTTTAAAAAGACATAtaagtgcagtacataatcagagcaaaccctttgagtgtgagttttgtcgaaaatcatttggagaaaaaagtcaacTCACAGCCCATATTGAGTTAGTACACCTTCGTAggaaaccctttgagtgtgagttttgtcgaaaatcatttggacgaaaaagttACCTCACAGTTCATATTAAGGAAGTACACCTTCGGAGTAAATcctttgagtgtgatatttgtcatgaATCATTTGCACGAAAAAGTGGTCTCAAAAAGCACGCAAGTATAGTCCACGAACGCaacaaaccttttgaatgtcaGTTTTGTCACAAagcatttggactaaaaagtGACCTTAAAAGACATATAAgtgtagtacataatcggagcaaacctttcgagtgtgagatttgtaataaatcatttggacaaaaaagtcacCTCACAGCCCATATTGAGTTAGTACACCTTCGTAggaaaccctttgagtgtgagatttgtaaTCACTCATATGGACGCAATAGTTatctcaagaaacacatcAAAACAGTACATCTTCGGAGttaa
- Protein Sequence
- MESRKDLVSVEGEPRDNWEDVANESVDPGFLVKTEISEESSTNESSDEISIELETENVKLEPKPSLTTICQATVKEENPGFSVKTENSEESSSNESSDEISIELETENVKLEHKPSSTNICQTTVKEENPGFSVKSENSDESSTSESSANPTNDSMMKEEPRDNCEDVADVSVDPGISVKTENSEESSSNESSDEISIELETENVKLEPKPSLTTIGQTTREKENPTNNLNGTKLTILIKKGFNYDSNCKFTREEATSTKQMKTTHKGNGPHECEICHKSFRKPSVLKAHVNRVHDKIKPFQCEICHKSFGRKYDLKNHVNAVHNQSKPFECNICHESFTRKDNLKIHISIVHERSKPFECQFCHKAFALKSRLKRHISAVHNQSKPFECEFCRKSFGEKSQLTAHIELVHLRRKPFECEFCRKSFGRKSYLTVHIKEVHLRSKSFECDICHESFARKSGLKKHASIVHERNKPFECQFCHKAFGLKSDLKRHISVVHNRSKPFECEICNKSFGQKSHLTAHIELVHLRRKPFECEICNHSYGRNSYLKKHIKTVHLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485237;
- 90% Identity
- iTF_01485237;
- 80% Identity
- iTF_01485237;