Tpre002409.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:6879-8983[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 8.4 6.0 1.4 19 31 193 209 190 215 0.73 2 12 0.034 2.5 7.7 0.3 21 44 223 243 222 243 0.91 3 12 0.52 39 3.9 2.8 18 43 248 270 246 271 0.83 4 12 0.11 7.8 6.1 0.6 19 36 277 291 274 299 0.74 5 12 0.00063 0.047 13.2 2.1 18 44 304 327 298 327 0.91 6 12 0.0014 0.11 12.1 0.2 19 43 333 354 330 355 0.96 7 12 2.3 1.7e+02 1.8 1.2 18 43 360 382 357 383 0.71 8 12 0.018 1.3 8.6 1.9 19 43 389 410 386 411 0.93 9 12 0.28 21 4.7 0.5 19 43 417 438 415 439 0.87 10 12 0.58 43 3.7 0.3 18 44 444 467 440 467 0.89 11 12 0.31 23 4.6 2.5 18 37 472 488 469 495 0.79 12 12 0.87 65 3.2 2.0 15 38 497 522 488 522 0.76
Sequence Information
- Coding Sequence
- ATGGAATCGAGTAATTTCTCGAAGGTGCCAGTAGCTTGTACAatcagAGTCAAAAAAGAACCTCGTGATGAGTCGTTTGATGAGAATTATGGCGAAACAATTGACCAAACGCACGACGTTAAAAATGTTCGATTCTGCAGAGAATACTCGACGCTTCaagaaagtaaagaaaattacaaaaatgaacTCGACAAAATGCGAATCGAATTCGAATGTGTAGACGTTAAGCTCGATTTATCGGCAGTTGCGAAAATTGAAGATTACTCTCCACGTCAATGGCAGGATATGAAGTACAGCGACGATTACAAAACTGAAAGTACAGTCAAATTAGAAACAGTTGGGATAGTGAAGAAAGAATTTTCAGGCGAAGAGGCAACGAAATTTAATCTTGATCGTGGACTCAGCGAGCAGGATGGAAAAAGAAGCGCTACAAAACAGTTGAGCTTTGAAGGTAGACTCAAAATACGCGACGACTCGGCGCATAATGGCACGGCAGCTGCACGCGAAAAGACGTCtgaacgaaagaaaaatccCAAGGTCCACAGTGACTCGGTCCACGGTGGTATCACTCACGCATGTCGTAcgtgtggaaagacatttacacgaaaaatttacctcaaaaatcatattgaaGGGTTGCACAATGGTATCGGTTATGCATATGGTATATGCGGAAAAAAGGTCGTAAATAAgggtaatttaaaaaaacacatcgaatcgatgcataatggtgtcagtcacgaatgtaatatttgcagAAATGTTTTTAAACAAAGACATGATCTGAATAGACATATCGAGTTGGTTCATAATGGCATTTCACAtgcgtgtgatatttgcgaaaagacattcacacggAAGGGTCATCTCAAAATCcatatcgattcggtgcattataaaatcaagCATGCATGTGGTATATGCCAAAAGATATACTCAGAAAAGAGTACtatgaaaaaacatatcgattcggtgcataatggcaTTTCACATCCATGTGATATATGCCcaaagacattctcagacaagagtaatcttaaaaaacacatcgattcgatgcatTATGGGGTCAAACATGCGTGTGgtatatgccaaaagacattcccACACAAAGTTAGtatcaaaaaacacatcgattcggtgcataatggagTTTTACATGCATGTGATgtttgtggaaagacattcactcaaaaaggtaatctcaaaactcacatcaaGTCGGTACATCATAAAATCACGCATCCATGCGAtaaatgccaaaagacattttcaGACAAGCGTACTCTCAAGAATCACATCGAtgcggtgcataatggtgtcagaCACGAATGCGATTTTTGcggaaataaattcataacGAAAAGTTATCTTAAAGTTCACATCGagtcggtgcataatggtgtcagaCACGAATGCGAGATTTGTAGCAAGAAATTTACaagcaagaaaaatataacaagGCACAAGGATGAAATGCACAATGGTACCACCCATGTATGTGAGACATGCGGTAAGATATTCGGACGAAAAAGGAGTCTCGAAGCCCACACCGTTATGGCACATCCCTCGCCCATTGCGAACTGA
- Protein Sequence
- MESSNFSKVPVACTIRVKKEPRDESFDENYGETIDQTHDVKNVRFCREYSTLQESKENYKNELDKMRIEFECVDVKLDLSAVAKIEDYSPRQWQDMKYSDDYKTESTVKLETVGIVKKEFSGEEATKFNLDRGLSEQDGKRSATKQLSFEGRLKIRDDSAHNGTAAAREKTSERKKNPKVHSDSVHGGITHACRTCGKTFTRKIYLKNHIEGLHNGIGYAYGICGKKVVNKGNLKKHIESMHNGVSHECNICRNVFKQRHDLNRHIELVHNGISHACDICEKTFTRKGHLKIHIDSVHYKIKHACGICQKIYSEKSTMKKHIDSVHNGISHPCDICPKTFSDKSNLKKHIDSMHYGVKHACGICQKTFPHKVSIKKHIDSVHNGVLHACDVCGKTFTQKGNLKTHIKSVHHKITHPCDKCQKTFSDKRTLKNHIDAVHNGVRHECDFCGNKFITKSYLKVHIESVHNGVRHECEICSKKFTSKKNITRHKDEMHNGTTHVCETCGKIFGRKRSLEAHTVMAHPSPIAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485215;
- 90% Identity
- iTF_01485215;
- 80% Identity
- iTF_01485215;