Tpre006294.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:330365-332614[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00098 0.073 12.6 0.7 4 44 172 209 169 211 0.81 2 10 0.18 14 5.3 0.5 13 29 268 284 259 294 0.77 3 10 0.0029 0.21 11.1 1.2 18 43 303 325 290 326 0.90 4 10 0.0031 0.23 11.0 0.7 17 43 331 354 327 355 0.91 5 10 0.14 10 5.7 3.3 17 43 360 383 355 384 0.85 6 10 0.13 9.5 5.8 2.9 12 43 384 412 377 413 0.81 7 10 0.83 62 3.2 0.7 4 40 405 438 402 442 0.74 8 10 0.55 41 3.8 4.8 8 43 438 470 432 471 0.76 9 10 0.013 0.97 9.0 6.8 1 43 460 499 460 500 0.92 10 10 1.2 91 2.7 1.1 13 43 501 528 493 529 0.77
Sequence Information
- Coding Sequence
- atgatgaaaaacaaCAGTGACTTAATTAGggtgaaggaagagcctAACGATACGTGGCAAGATGCCGGTGGCAATCACGTTTTCGATTTGATGGACTCTTGCAAAGCTGAAAGCGTTGAGATATTGCCTTTTCATGAATTATCGGCAAAGAACGCGAACGATGCTGAGGCGTTAGAGGAGAGGTTAGGTAAAAACATAATTAcagattttgagtgcaaaaatgttaaactcGAGCGGTCATCTCTATCGACCAAAATCTGCAAATCTGAGTATCAAAGTAGTCAACCTTGTGTGAAAAAGGAAAACGAAAATCCGACTAAttacatgaatgaaaaaagtttaacaatattgattgaaaaaggGTTTAATTATAGAGATAATTGTCAAATGAATGTGAATTCTTGTATAGTACTTGCCGAATATGGAAAACAGAAAGATTTTGGAAAaaccgttgaaaaaaaatcatctgaTTTACCCATATGTCGAAAAACTCATACAGCAAGAGCAAGTCTAAAAAAGCATATGGGTACGACACTTGAACAAAGAGGGCTgtataaatgtgaaatttgtaaCGAATCATTTTCCCGCAGTAATGatctcaaaattcatttaGGATCGGTACACAATCACAACAAACGCTTGAAATGTAACGTTTTTCACAATTCATTTAGTCGCAAGCATGATCTTGAAATTCATCAACATACAGTACATACTTGTAAAAAATCCCTCGAATGCAATGTTCGTTACAACTCATTGTCATTCAAGGGTGATCTCAATAagcatataaatgtattacacAATAGAAACAaactctttgaatgtgaaatttgccacAATTCgatttcacaaaaattttacCTCCAACGTTACGTGAATACAGTAGTACATGATcgcagcaaaccctttgattgtgatatttgtcacaaatcattttcatttaagaGTACACTCAACAGACACATAAAATCAGTACATGATcgcagcaaaccctttgagtgtgacatttgtcacaaatcatttggacgaaaagaaaatcttAAAGCTCATATTAGTACAGTACacgatcgtagcaaaccctttgagtgtgatatttgtcacaaatcattttcatgtaAGGGTAATCTCAACAGACACATAAAATTAGTACATGACCGCAGCAAACCCTTtaagtgtgacatttgtcacaaatcatttggacgaaaagaaGATCTTAAAGCTCATATTAGTACAGTACacgatcgtagcaaacccttcgagtgtgaggtttgtcagaaatcattttcatttaaggGTAAACTCAACAGACACATAAAATTAGTACATGaccgtagcaaaccctttgagtgtgacatttgtcacaaatcatttagagataaaagtaaagtgaaaaatcacataaattcagtgcataatgTTAGCAAACCCattgagtgtgatatttgtcacaaatcattttcatgtaAGGGTAATCTCAACAGACACATAAAATTAGTACATGACcgcagcaaaccctttgagtgtgacatttgtcatgAATCGTTTGGACAAATAGGATCACTTGATAGACACATAAAATCAGTACATGATTGCAGCAATTGTAACCCTtag
- Protein Sequence
- MMKNNSDLIRVKEEPNDTWQDAGGNHVFDLMDSCKAESVEILPFHELSAKNANDAEALEERLGKNIITDFECKNVKLERSSLSTKICKSEYQSSQPCVKKENENPTNYMNEKSLTILIEKGFNYRDNCQMNVNSCIVLAEYGKQKDFGKTVEKKSSDLPICRKTHTARASLKKHMGTTLEQRGLYKCEICNESFSRSNDLKIHLGSVHNHNKRLKCNVFHNSFSRKHDLEIHQHTVHTCKKSLECNVRYNSLSFKGDLNKHINVLHNRNKLFECEICHNSISQKFYLQRYVNTVVHDRSKPFDCDICHKSFSFKSTLNRHIKSVHDRSKPFECDICHKSFGRKENLKAHISTVHDRSKPFECDICHKSFSCKGNLNRHIKLVHDRSKPFKCDICHKSFGRKEDLKAHISTVHDRSKPFECEVCQKSFSFKGKLNRHIKLVHDRSKPFECDICHKSFRDKSKVKNHINSVHNVSKPIECDICHKSFSCKGNLNRHIKLVHDRSKPFECDICHESFGQIGSLDRHIKSVHDCSNCNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485271;
- 90% Identity
- iTF_01485271;
- 80% Identity
- iTF_01485271;