Tpre001852.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:80149-82380[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.53 40 3.8 3.8 19 43 46 67 35 68 0.82 2 12 0.00014 0.011 15.3 1.0 17 44 72 96 69 96 0.93 3 12 0.85 63 3.2 0.5 19 29 102 112 99 128 0.77 4 12 0.77 58 3.3 0.5 19 29 130 140 127 156 0.72 5 12 0.15 11 5.6 2.2 19 44 158 180 155 180 0.92 6 12 0.48 36 4.0 1.9 18 44 185 208 182 208 0.91 7 12 0.03 2.2 7.9 0.7 18 44 213 236 211 236 0.92 8 12 0.0046 0.34 10.5 1.9 18 43 241 263 239 267 0.93 9 12 0.046 3.4 7.2 6.8 14 44 275 302 262 302 0.80 10 12 0.15 11 5.6 1.1 18 28 307 317 303 330 0.74 11 12 0.77 58 3.3 2.1 18 35 335 354 321 357 0.79 12 12 0.011 0.82 9.2 2.1 18 43 362 384 346 385 0.85
Sequence Information
- Coding Sequence
- ATGAACGATAGCGATGTTTACAATactcaaaacaaaattaaaatagaaccTGCCGAGGAAATGAAACGAGAAATTGTCAGCGAACATAAAATCAAAGCAGTCATTAGTTtggtacataataaaaatactcatttatgtaatatttgcggaaagtcatttgtGCACAAAATGAGTCTCAAAAGACACATCGATTAcgtgcacaatggtgtcaaacatgtatgtgatatttgcggcaaGACGTATAAAGACAAGAATAGACTTTATAGGCATGTTCAAACAgcgcataatggtgtcacctattcatgtgatatttgtagAAAGACATTCTCAACCAAATGGTATGTCAAAATCCACGTCGATTCGATGCACAATGGAATTACCCACTCATGTGATGTTTGCGGAAAGACACTCTCAACCAAATGGTATCTTAAAATACACGTCGATTCGATGCACAATGGGATTACCCACTCATGCGAtgtttgcggaaagaaattctcaaagaGGTGTaatctcaataaacacatgGATTCGGTACACAATAAAATCACTCACACATGCAATACATGTCAGAAGTCGTTCACAACTAAAGATtatctcaaaacccacatcgattcgatgcataatggtatcgCGCCTAGATGCAGTGTatgcgaaaagacattcacactaAACAGTCATCTTAAAACACACATGGATTCTGCACACAATGGTGTCACGCATACGTGTAATACATGTGGAAAggcattcaaatttaaaagtaatctcaGAAACCACGTCAATTCGATACATGTCAAAAAGCACATCGATGCGGGACACTGCGGTAGTATCAAATATGCATGTAATACATGTGGAAAGTCATATTCACAAAAGTGTAATCTAAAAACCCACATTGATACGGTGCATAATCGCGTCAAAAAAGTATGCAATATTTGTGGGAAAACCTTCTTATCTAATCGGTATCTCAAAGTCCACgtcgattcggtgcacaaaGGTGTCAGGCATGCGTGCAATacatgtggaaagaaattcacAACGAAAGATTATCTAAAAATCCACACTATGGCGCATAACGGTGTCGAATTTTCGTGCGacatttgcggaaagaaattctcaactAACAAGTATCTCAAATACCATATTAATTCGGCTCATCACTCGCGCATCTATGCTAATAAAATGTTCAACCCCTCAATTGTCCATTTTCAGCTTTCTAGTCTCTTTTCAGCTCATTTCGCTCGCGCTAAATTCTGCAAGCTTACTTTTATAGAAATTGTTAACGTTATTCATcacattactttttttataaaaggaTAA
- Protein Sequence
- MNDSDVYNTQNKIKIEPAEEMKREIVSEHKIKAVISLVHNKNTHLCNICGKSFVHKMSLKRHIDYVHNGVKHVCDICGKTYKDKNRLYRHVQTAHNGVTYSCDICRKTFSTKWYVKIHVDSMHNGITHSCDVCGKTLSTKWYLKIHVDSMHNGITHSCDVCGKKFSKRCNLNKHMDSVHNKITHTCNTCQKSFTTKDYLKTHIDSMHNGIAPRCSVCEKTFTLNSHLKTHMDSAHNGVTHTCNTCGKAFKFKSNLRNHVNSIHVKKHIDAGHCGSIKYACNTCGKSYSQKCNLKTHIDTVHNRVKKVCNICGKTFLSNRYLKVHVDSVHKGVRHACNTCGKKFTTKDYLKIHTMAHNGVEFSCDICGKKFSTNKYLKYHINSAHHSRIYANKMFNPSIVHFQLSSLFSAHFARAKFCKLTFIEIVNVIHHITFFIKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485197;
- 90% Identity
- iTF_01485197;
- 80% Identity
- iTF_01485197;