Tpre002909.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:178285-180091[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.69 52 3.5 1.5 18 43 160 182 143 183 0.81 2 12 0.56 42 3.8 1.3 19 38 189 205 184 211 0.83 3 12 0.00093 0.069 12.7 1.4 19 44 217 239 212 239 0.93 4 12 0.004 0.29 10.7 0.7 19 44 245 267 241 267 0.93 5 12 0.00039 0.029 13.9 0.8 18 44 272 295 269 295 0.94 6 12 0.13 9.7 5.8 1.0 19 43 301 322 298 323 0.81 7 12 2.4 1.8e+02 1.8 1.8 19 43 329 350 327 351 0.79 8 12 0.1 7.8 6.1 0.6 19 44 357 379 354 384 0.80 9 12 0.71 53 3.4 0.3 19 39 385 402 379 411 0.74 10 12 1.5 1.1e+02 2.4 0.7 18 37 412 428 400 435 0.74 11 12 0.005 0.37 10.3 1.2 19 44 441 463 437 463 0.93 12 12 0.41 31 4.2 1.7 19 43 469 490 466 491 0.89
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATGCTGCTgttagagtgaaagtCGAGCCTTGTGATAATTTGCTTACccaaaataattatgaaacaaTCGATGCGATACCCGTAACTGAAAATGTCAAGTACGAAAGGTTTCTTCAAGAAAACTCGACCCAAGAGCTTCAAGAAAATGAGCTTGACGACATTCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGACAGTGGTGAAAATAGAAGATTATTCTCCAAGTCAATGGCCAGATAGCGAAGAGTATAAAACCGGAGGcaaaataaaagtagaaaCTGTCGGGTCAgtgaagaaagaaattttgagGGAAGgagaaaatgatttaaatttaggACGTGGACtcagcgagaaaaatgaaacaggAAGTGTTTCAAAAGAGCTAAATTATGAGCATAGGCTAAAAACTCACACTGAATCAGCCCGTAATGGCAATATCAAAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTCATCTCAATAggcacatcgattcggtgcatcgtAAAATCACGCAttcatgcgatatatgccTAAAGACATTCTCAAATAAAAGTAATCTTAAAATACACAGTGATTCagtgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGAGTCGGTGCATAATGAAGTCAGgcatgcatgcgatatatgccaaaagaaattctcagacaagggtaatctcaaaacccacatcgagTCGGTGCATCGTAAAATAAGGCACACGtgcgatatatgccaaaagacattctcagacaagagtaatttcaaaaagcacatcgattcggtgcataatggtgtcagaCATTCGTGCGGTATTTGCCAAAAAACATTCTCACAAAAAGGTTATTTCAAAACTcatatcgattcggtgcacaagCGAGTCGGGCATGCATGTGACATGTGTGCAAAGACATTCTCACAAAAAAGTCATCTCAAAACCCACACCGAATCGGTGCATTATGGTatttcacatgcatgtgatgtttgtgaaaagacatttacTCGAAAAGatcatctcaaaatccacatagAATCGGTGCATAATAGTGTCagacatgcatgcgatatttgtgaaaagacattcacaacAAAGTATTATCTCCAAAGGCATATCGACGCTGTGCACAATGGAACCGGCTTCGCATGTGATGTGTGCACAAAGAAATTTACTGCGAAAAGTAGTATTAAAGCTCATATCGATGCGGAACACAATGGAATCACCCACGCATGTGATTtctgtggaaaaaaatttaaatatcaaacTCAACTCCGTAAGCATGTCAAATCGTCGCATAGTGGTATCATACATTCATGCGAGACctgcggaaagacattcagacaaaaaagaaatcttaAAGCTCACATCGATGCGACGCACCGCTCACGCAATCAGAcctaa
- Protein Sequence
- METSGLFNAAVRVKVEPCDNLLTQNNYETIDAIPVTENVKYERFLQENSTQELQENELDDIQIELECTDMKPNLLTVVKIEDYSPSQWPDSEEYKTGGKIKVETVGSVKKEILREGENDLNLGRGLSEKNETGSVSKELNYEHRLKTHTESARNGNIKPACDICGKVFKLRGHLNRHIDSVHRKITHSCDICLKTFSNKSNLKIHSDSVHYKIMHPCDVCQKTFSNRSNLRKHIESVHNEVRHACDICQKKFSDKGNLKTHIESVHRKIRHTCDICQKTFSDKSNFKKHIDSVHNGVRHSCGICQKTFSQKGYFKTHIDSVHKRVGHACDMCAKTFSQKSHLKTHTESVHYGISHACDVCEKTFTRKDHLKIHIESVHNSVRHACDICEKTFTTKYYLQRHIDAVHNGTGFACDVCTKKFTAKSSIKAHIDAEHNGITHACDFCGKKFKYQTQLRKHVKSSHSGIIHSCETCGKTFRQKRNLKAHIDATHRSRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485160;
- 90% Identity
- iTF_01485160;
- 80% Identity
- iTF_01485160;