Tpre007953.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:213741-214979[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00037 0.028 13.9 0.7 17 43 75 98 67 99 0.91 2 12 0.052 3.8 7.1 0.4 19 29 105 115 103 127 0.82 3 12 0.047 3.5 7.2 5.0 18 44 132 155 131 155 0.95 4 12 0.0035 0.26 10.8 1.2 18 44 160 183 156 183 0.87 5 12 0.032 2.4 7.7 2.1 18 40 188 207 184 216 0.72 6 12 3.4 2.6e+02 1.3 5.5 13 43 211 238 205 239 0.82 7 12 0.41 31 4.2 9.9 13 44 239 267 229 267 0.86 8 12 6.4 4.8e+02 0.4 2.6 15 29 269 283 268 299 0.73 9 12 0.36 27 4.4 3.4 16 43 298 322 288 323 0.78 10 12 0.1 7.6 6.1 0.3 19 31 329 341 326 355 0.76 11 12 0.38 29 4.3 1.9 19 33 357 368 353 383 0.70 12 12 0.042 3.2 7.4 0.7 18 44 384 407 380 407 0.94
Sequence Information
- Coding Sequence
- ATGGAAATAGTTTTTGAAAGTGAAGACGTCAAGCCCAACTTTGATTTATTGACAATTCAGAAAATTAacgatcattttcaaaatccCTTGCGGAATATGAAAGGTAGGAACATCATTAAAATCGAAACCGAAGACGAAATGAAACAAGCAATTTTTAGTGAcgctgcaaaaaaatttactatgaATCTCGACCGTAAACTTATCGAGCACAATGAAATCACTTacaaatgtgatatttgcgacAAGATGTTTAAAAGGAAGAGTGGTCTGACGAGGCACGTTCAATCAGAGCATATTGGTGTCACCCActcatgtaatatatgcggaAAGTCTTTCGCTCGAAAAGGTTATCTAAAAATCCACACCGATTCGGTGCATGGTGGTATCGGACATACATGCGatacatgtggaaagacatttaaACATAAACgtaatctcaaaacccacatcgattcgaGGCACAACGGGACTACCCACTCATGTGGTATTTgcggaaaatcattttcatataaagttagtctcaaaacccacatcgattcgaGGCACAATGGGACTACCCACTCATGTGGTATTTgcggaaaatcattttcatataaagTTAGTCTCAAAACCCACATAAAATCGATGCAAAATAGGACTAAACATATGTGCAGTAAATGTGGAAAAAGGTTCGCTCAAAAAGTTcatctcaaaacccacatcgacTCTGTGCACAATGGGACTAAACATACGTGCAGtacatgtggaaagacatttaatcataaaagtaGTCTTCAAACCCATATCAAATCGATGCACAATGGGACTAAACATATGTGCAATACATGTGGAAAAAGGTTCCCTCAAAAAGTTCATCTCAcaatccacatcgattcagtgcacAATAGTGTCAAACATGTATGTGATATATGTGGAAAATCATTTACTCAGAAAGgtcatctcaaaatccacatcaattcagtgcacaatggtgtcaccttctcatgtgatatttgcggcaaGTCATTTACACGGAAAGGTAGTCTCcaaatccacatcgattctgtgcacaatggtgtcacccactcatgtaatatatgcggaAAGTCTTTCACTCAAAGAAGTTATCTAAAAATCCACACCAATTCCGTGCATAGTGGTATCAGACATACATGCGATACATGTGGAAAGAGGTTCGCACAAAAAAGTCATCTCAAAGCCCACATCGATTCGGCACATTCGTCACGCATTACAACTTGa
- Protein Sequence
- MEIVFESEDVKPNFDLLTIQKINDHFQNPLRNMKGRNIIKIETEDEMKQAIFSDAAKKFTMNLDRKLIEHNEITYKCDICDKMFKRKSGLTRHVQSEHIGVTHSCNICGKSFARKGYLKIHTDSVHGGIGHTCDTCGKTFKHKRNLKTHIDSRHNGTTHSCGICGKSFSYKVSLKTHIDSRHNGTTHSCGICGKSFSYKVSLKTHIKSMQNRTKHMCSKCGKRFAQKVHLKTHIDSVHNGTKHTCSTCGKTFNHKSSLQTHIKSMHNGTKHMCNTCGKRFPQKVHLTIHIDSVHNSVKHVCDICGKSFTQKGHLKIHINSVHNGVTFSCDICGKSFTRKGSLQIHIDSVHNGVTHSCNICGKSFTQRSYLKIHTNSVHSGIRHTCDTCGKRFAQKSHLKAHIDSAHSSRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485095;
- 90% Identity
- iTF_01485095;
- 80% Identity
- iTF_01485095;