Tpre010783.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1226543-1228635[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00034 0.026 14.1 1.0 12 43 154 182 145 183 0.81 2 12 1.3 96 2.6 0.6 18 32 188 201 183 211 0.77 3 12 7.3 5.4e+02 0.2 0.7 18 26 216 224 202 243 0.86 4 12 0.4 29 4.3 0.8 18 39 244 262 238 270 0.80 5 12 1.1 80 2.9 3.4 16 44 269 294 258 294 0.87 6 12 0.97 73 3.0 0.8 18 43 299 321 296 326 0.80 7 12 0.95 70 3.0 0.4 18 29 327 338 322 354 0.80 8 12 1.4 1e+02 2.5 1.3 16 29 353 366 344 380 0.76 9 12 0.072 5.4 6.6 1.0 18 43 383 405 371 406 0.85 10 12 0.23 17 5.0 0.4 19 44 412 434 407 434 0.92 11 12 0.00021 0.015 14.8 2.4 1 44 423 462 423 462 0.91 12 12 0.0016 0.12 11.9 0.3 18 43 467 489 464 490 0.94
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGGAGGAACCAAATGATGTTTCCccaattgaaaatgaagattataTGATAATTGACAATGCATGCGATGCTAAAAACGACGCATTCTCGAGtttttgtcgagaaaatttaATTCATGAGCTTCGAgaatatgatgaaaattctGGACCTAAAAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGACATTAACTTATTAGTAGTCAAAAAGATCGAGGACGATTATCCAGATCATTTGCAACATATCAAAAAAAGGTGCGATTATCAGActtcaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTTAATTTGGACGGTGCACTCAGTGATGCATtaaatgcaaagaaaaaaacatttgctcaaaaaAGTCTATGCGAAACCCAAAATGATAAAGTACGCAATCGTACCAAAtatccatgtaatatatgcggtaaaaaatttacacgaaaagGTAGTCTTAaggtccacatcgattcagttcATAGTGACCTCAAGCATATGTGTGTgacatgtggaaagacattcacacaaaaaggtactctcaaaattcacatcgatgggATTCATAATGATATGGCACCAACTTGCGAAgtatgcgggaagaaattctTAACTGAAGCTGTACTCAAGATCCATATcgatggagtacataatggtgttaaacatgcgtgtggtgtatgtggaaaaacattcacacaaaaaggagATCTCAAGAGGCATATCGAGggacataatggtgttaaacatacATGTGTTACGTGTGGAAAGtcattcatacaaaaaaaaaatctcaaaatgcacatcgatgcgatgcataatggtatggcacctacttgcgaaatgtgcggaaagaaatttcaaacgaaggCTAAACTCAAGattcacatcgattcagtacataatggtgttaaacatgcgtgtggtgtatgtggaaagacattcgcccaaaaaggagatctcaaaattcacatcgatgcaatTCATAATGGTATTAAACATGAGTGCGTtacatgtggaaagacattcacacaaaaaggtatactcaaaatccacattgatgcgatgcataaaggTACGGGACCTACTTGCGAAGtctgcggaaagaaattctcaacaaAGACTAAACTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTAGCAAAATATTTACGCTGAAAGATAATCTTAAGAAACACATCGATGCTATGCATAAAGGTCAGGCCCCAACATGCGAAgtgtgcggaaagacattctcaCTAAAGGGTAATCTTAAAAGACACATGAATTTGATGCATAATAAGATAACTTACGTTTGTAATACGTGtggcaagacattttcacaaaaggaTAGTCTTATAATTCACATTAGAACACAGCATGGAGATATTAATCACGTAAGTGTTTaa
- Protein Sequence
- MDFSDVYNSDVRVKEEPNDVSPIENEDYMIIDNACDAKNDAFSSFCRENLIHELREYDENSGPKNDLEIEFECKDEKLDINLLVVKKIEDDYPDHLQHIKKRCDYQTSKKIKEEIVDEVKEEFNLDGALSDALNAKKKTFAQKSLCETQNDKVRNRTKYPCNICGKKFTRKGSLKVHIDSVHSDLKHMCVTCGKTFTQKGTLKIHIDGIHNDMAPTCEVCGKKFLTEAVLKIHIDGVHNGVKHACGVCGKTFTQKGDLKRHIEGHNGVKHTCVTCGKSFIQKKNLKMHIDAMHNGMAPTCEMCGKKFQTKAKLKIHIDSVHNGVKHACGVCGKTFAQKGDLKIHIDAIHNGIKHECVTCGKTFTQKGILKIHIDAMHKGTGPTCEVCGKKFSTKTKLKLHMDAVHNKITHACDTCSKIFTLKDNLKKHIDAMHKGQAPTCEVCGKTFSLKGNLKRHMNLMHNKITYVCNTCGKTFSQKDSLIIHIRTQHGDINHVSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485130;
- 90% Identity
- iTF_01485130;
- 80% Identity
- iTF_01485130;