Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.7e-05 0.002 17.6 2.6 10 43 164 194 158 195 0.90

2 5 0.024 1.8 8.1 0.7 19 29 201 211 198 223 0.79

3 5 2.7 2e+02 1.6 0.2 33 43 240 250 227 251 0.82

4 5 0.074 5.5 6.6 0.2 19 44 257 279 254 279 0.83

5 5 0.11 8.2 6.0 2.1 13 29 279 295 273 302 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.7e-05	0.002	17.6	2.6	10	43	164	194	158	195	0.90
2	5	0.024	1.8	8.1	0.7	19	29	201	211	198	223	0.79
3	5	2.7	2e+02	1.6	0.2	33	43	240	250	227	251	0.82
4	5	0.074	5.5	6.6	0.2	19	44	257	279	254	279	0.83
5	5	0.11	8.2	6.0	2.1	13	29	279	295	273	302	0.79

Coding Sequence: ATGAAACCAAGTGAAAAGTTCAACTATGGTGTCAgaatAAAAAGTGAACCCGTTGATGTGTCATTTACTGATAATGAGTACGATATCATTGACACGGCACTCGACGTTAAAGATTTTCAATTCCTCAAATGTCCGCAGGAAAATCCTgAACATATGCTTCCAAAATCCGACGAAAATCATAAAGGTGAACTAGACGAGATAGCAGTCGAGTTTGAATGTCAATATATGAAGCTCAACGTGGATTTATTAGCAGttgcgaaaattgaaaattggtcTCAAAGTCACTCCCCGGCTATGAAAAATAGTAACGATTATCAAACTCAAGAcaatattaaaatagaaactttgggagcagtaaaaaaagaatcatttgTGGACGAcgaaaaacaattgaatattGATTTCGACTGTGGTCTCAGCAAGCCAAGTGAGGAAAACAGTGTCACAAAAGAGTTGATCGATGACCATAGACTCGAAACGCAAACCATAACGACGCGTAGTAGTACTGACATTGCATGCGAGATATGCAGTAAAAAATTCTCAAGGAAATATTGTCTCAAAAGTCACATCGTTTCGGTGCATCATAAAGTCACTCatgcatgtaatatatgcggtaAGACATTTTCAACAAAGGATTATCTAAAAAACCATACCATCGCGGTGCACAAGGGTGTCCCAAATGTTTGTGATACACGCGGAAAGTCATTTGCTGCTAAAAGCTGTCTCAAAgttcacatcgattcggtgcatcaCAAAATCACTCacgcatgtgatatatgcggaaagtcatttacCCAGAAAGGTAGTCTGAAAACCCACATCGTTGCGGTGCATAAAGAAATCAAACATACATGTGATTTGTGCGGAAAGATGTATACTCGAAAGGTTTTTTCTCAAAAGACATGTAAAATCTTCCCATGA
Protein Sequence: MKPSEKFNYGVRIKSEPVDVSFTDNEYDIIDTALDVKDFQFLKCPQENPEHMLPKSDENHKGELDEIAVEFECQYMKLNVDLLAVAKIENWSQSHSPAMKNSNDYQTQDNIKIETLGAVKKESFVDDEKQLNIDFDCGLSKPSEENSVTKELIDDHRLETQTITTRSSTDIACEICSKKFSRKYCLKSHIVSVHHKVTHACNICGKTFSTKDYLKNHTIAVHKGVPNVCDTRGKSFAAKSCLKVHIDSVHHKITHACDICGKSFTQKGSLKTHIVAVHKEIKHTCDLCGKMYTRKVFSQKTCKIFP

Sequence clustering based on sequence similarity using MMseqs2