Tpre007786.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:293921-295560[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 9 5.9 1.9 19 43 157 178 153 179 0.82 2 10 3.9 2.9e+02 1.1 3.6 13 44 179 207 169 207 0.77 3 10 0.11 8 6.1 0.4 17 44 211 235 207 235 0.85 4 10 0.12 9.1 5.9 1.6 19 44 241 263 238 263 0.89 5 10 0.54 40 3.8 1.5 18 39 268 286 266 291 0.75 6 10 0.0045 0.34 10.5 1.2 16 44 294 319 283 319 0.89 7 10 0.57 42 3.8 2.5 18 43 325 347 322 348 0.84 8 10 0.19 14 5.3 1.2 16 33 351 373 339 376 0.79 9 10 0.011 0.82 9.2 1.9 18 43 381 403 374 404 0.90 10 10 0.00019 0.014 14.9 7.0 15 43 406 431 403 432 0.93
Sequence Information
- Coding Sequence
- ATGGAATCTAACGGTTTATTCAACGGTGCCATCAGAATAAAGGAGGAACCTATTGAGGTGTCGCTTacagaaaataatgattttgaaaCGATTGACAAGGAACCCAATAGGAAAAATGTTCAGTCCTCCAGATTTCGAGATAATTCTACCTGTAAGCTCCAAGAACGGGACAGATATTATGAATCTGAATTGAAAGATCTGGAAATTGAATTCGAGTGTAGAGACGAAAAGCCTCACATAAACTTATTAGTAGTAAAGGACGATTATTCTCAAAATTACTtgcaaaacatgaaaaatagtgATGATTATATGACTCAAAACATCATTAAAACAGAATCCGtggttgtaaaaaaagaattttccgacatcgatgatgaaaaattgaaaaaatttgttgatgaTGGATTCAGCAAACCAAACAgtacgaaaaagaaaattgatttgGCCCACAACGGTGTTACACATTCGTGTAATGTATGTGGAAAAACGTTTGGTTATAAGACAAGTGTAAAACATCACATAGATACAATTCATAAAGGTATTAACTACGCTTGTGATGTATGTGgatcaaaattcaaaagtaaaagttatcTTAGAATCCACATcaatgcgatgcataatggtaatATCTATGCATGCGATACGTGCGGCAAGAATTATGTAACGAAGGGTAATCTCCAACTTCACATTGATTCAATGCACAATGGCATCACATTTGCATGTGAAATATGTGGAATGACTTTCTCAACTAAAGGAAATCTCCAATGTCACATCACATCGAAGCATAAAGGCATCACCCacacatgtgacaaatgcgggaaaaaaattgcaaaaaaacacgatctaaaaatccacattgatgcggtgcataatggtatcaaaCTTACATGTGAAGTATGTGGAAAAACGTTCTCAACTAAAGGGAATCTCCAATTTCACATCACGACGAAGCATAAAGGTATCACCCCCCAcgtatgtgacaaatgcgggaaaaaatttacacaaaagtgtcgcctcaaaaatcacattgatgtcgtgcataatggtatcaaaCTTACATGTGAAGTATGTGGAAAAACGTTCGCAACTAAATGGGGTCTCCAATTACACACCACGTCGAAGCATAAAGGCATCACCCAcatatgtgacaaatgcggGAAAAAATATACGCAAAAGTCTCgcctcaaaaatcacattgatGTCGTGCATAATGGTAACAAACTGAAATGTGAAGtatgtggaaagaaatttacacgaaaacATAATTTAAGAGCCCACATGCGTAATATGCACGTAATATGCAGTCGGTAA
- Protein Sequence
- MESNGLFNGAIRIKEEPIEVSLTENNDFETIDKEPNRKNVQSSRFRDNSTCKLQERDRYYESELKDLEIEFECRDEKPHINLLVVKDDYSQNYLQNMKNSDDYMTQNIIKTESVVVKKEFSDIDDEKLKKFVDDGFSKPNSTKKKIDLAHNGVTHSCNVCGKTFGYKTSVKHHIDTIHKGINYACDVCGSKFKSKSYLRIHINAMHNGNIYACDTCGKNYVTKGNLQLHIDSMHNGITFACEICGMTFSTKGNLQCHITSKHKGITHTCDKCGKKIAKKHDLKIHIDAVHNGIKLTCEVCGKTFSTKGNLQFHITTKHKGITPHVCDKCGKKFTQKCRLKNHIDVVHNGIKLTCEVCGKTFATKWGLQLHTTSKHKGITHICDKCGKKYTQKSRLKNHIDVVHNGNKLKCEVCGKKFTRKHNLRAHMRNMHVICSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485299;
- 90% Identity
- iTF_01485299;
- 80% Identity
- iTF_01485299;