Tpre007743.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:15563-17426[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00079 0.059 12.9 1.7 18 44 145 168 138 168 0.91 2 11 0.088 6.6 6.3 5.8 19 44 174 196 171 196 0.95 3 11 0.047 3.5 7.2 1.0 19 43 202 223 199 224 0.82 4 11 0.072 5.4 6.6 2.6 11 43 223 251 214 252 0.77 5 11 0.85 63 3.2 1.6 18 43 257 279 255 280 0.84 6 11 0.032 2.4 7.7 0.3 18 44 285 308 283 308 0.92 7 11 1.7 1.3e+02 2.2 5.2 18 44 313 336 311 336 0.94 8 11 0.083 6.2 6.4 1.6 18 43 341 363 339 364 0.94 9 11 0.001 0.077 12.5 0.1 19 44 370 392 367 392 0.95 10 11 0.0022 0.16 11.5 1.5 16 44 395 420 392 420 0.88 11 11 7.9 5.9e+02 0.1 1.9 19 43 426 447 423 448 0.83
Sequence Information
- Coding Sequence
- ATGGAATCCCGTGGTGAATTTGACTTTACGGcgagagtgaaagaagAGCCACGTGACGAGCCGCTCGACGAAAATGATTACCAAATGGGGTTTCTGCAAGAAAATCCATGTCTTGGGCTTCAGAAGTACGACGCAAAGCACGAACTTGACGACATCCGAATCGAACTCGAATGCAGGGACCAGAAGCCTTAcgcaaatttattaaaagtagaAAAGATGCAGGATTATTCGCAAAATCACTCGCAAGATGTGAAGTACGACGATCGTCGTGAGGCTCGATGCACAATCAAAGTAGAAAGCGCACAGGAAGTGAAACAGGAATTTTCTGGTGACGTTGCGGAAGAATCAAATTCGAATTTAGACTGTGAACTCAGCGAgcgaaatcaaaaaaaaagtgttgcaAGTAGATCAGTGGTTAGTGGCAACACCCACAATTGTGACACATGCGAAAAGACGTACAAACGAAAACTGAATCTCAAAcgccacatcgattcggtacataataaaataactcaCGCATGCGGTTTATGCGAAAAGACCTACAAATGTATAACTAATCTTCAAACCCACGTAAATTCGACGCATAAGGGTATGGCACCGgcgtgtgatatttgcggaaaaaaatactcgactAAGGGTCATCTTAAAGCTCACATCGATGCAGCTCATAATGGTAGCAAACCTACTTGCGACACATGCCGAAAGACATTCACGAGAAACAGTAGTCTTAAAGCTCACATCGATGCGACTCATAATGgtatcacacacacatgcgacaCATGCCGAAAGACATTCACGAGAAACAGTTATcttaaaattcacatcgatgcggcTCATAATGGTATCACATACACATGCGACATGTGCCGAAAGACATTCACGCAAAAAAGTAGTCTTAAAGCTCACATCGATGCGGCTCATAATGgtatcacacacacatgcgacaTGTGCCGAAAGACATTCGCACAAAGATGTAATcttaaaatccacatcgaatcgatgcataaaggtattttatatacatgtgataTGTGTGgaaatatgtataaacaaaAAGCCAATCTCAATAGACACATGAAAGAGACACATATTGGGATTACatatgcatgcgatatatgcgaAAAGACATACAAGCAAAAGAGTCAACTCAAAGATCACATTGATACACAGCATAAGGGCAAGAGCTACGcatgtgatttttgtgaaaaaaaatataattatcgaTCTACTCTCAATAAACATATTATATCGTCGCATAACGAtatcacacatgcatgcgaAACGTGCGGCAAggtatttggacaaaaaagaagTCTCAAAGCTCACATCGAAATGGCACATTGCCCACGCCTGAGCCcgtaa
- Protein Sequence
- MESRGEFDFTARVKEEPRDEPLDENDYQMGFLQENPCLGLQKYDAKHELDDIRIELECRDQKPYANLLKVEKMQDYSQNHSQDVKYDDRREARCTIKVESAQEVKQEFSGDVAEESNSNLDCELSERNQKKSVASRSVVSGNTHNCDTCEKTYKRKLNLKRHIDSVHNKITHACGLCEKTYKCITNLQTHVNSTHKGMAPACDICGKKYSTKGHLKAHIDAAHNGSKPTCDTCRKTFTRNSSLKAHIDATHNGITHTCDTCRKTFTRNSYLKIHIDAAHNGITYTCDMCRKTFTQKSSLKAHIDAAHNGITHTCDMCRKTFAQRCNLKIHIESMHKGILYTCDMCGNMYKQKANLNRHMKETHIGITYACDICEKTYKQKSQLKDHIDTQHKGKSYACDFCEKKYNYRSTLNKHIISSHNDITHACETCGKVFGQKRSLKAHIEMAHCPRLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485251;
- 90% Identity
- iTF_01485251;
- 80% Identity
- iTF_01485251;