Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.022 1.6 8.3 3.0 19 44 58 80 51 80 0.93

2 7 2.6 2e+02 1.6 1.1 15 43 82 107 81 108 0.77

3 7 1.5 1.1e+02 2.4 6.6 13 34 108 136 98 140 0.73

4 7 0.1 7.4 6.2 1.1 19 43 142 163 141 164 0.93

5 7 0.0019 0.14 11.7 1.0 19 43 170 191 167 196 0.89

6 7 0.0056 0.42 10.2 3.2 19 43 198 219 191 225 0.89

7 7 0.00089 0.066 12.7 1.7 19 44 226 248 219 248 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.022	1.6	8.3	3.0	19	44	58	80	51	80	0.93
2	7	2.6	2e+02	1.6	1.1	15	43	82	107	81	108	0.77
3	7	1.5	1.1e+02	2.4	6.6	13	34	108	136	98	140	0.73
4	7	0.1	7.4	6.2	1.1	19	43	142	163	141	164	0.93
5	7	0.0019	0.14	11.7	1.0	19	43	170	191	167	196	0.89
6	7	0.0056	0.42	10.2	3.2	19	43	198	219	191	225	0.89
7	7	0.00089	0.066	12.7	1.7	19	44	226	248	219	248	0.93

Coding Sequence: ATGAAATACAGCGAAGATTATAAAACTCAACCCACAATTAAAACAGAAACTCCTGTAAAAAAGGAATGTTTTAGTGATgaaacaacaaaattatattccGACTGTGAACTCAGagcacaaaatgaaaaaagaagtccAGTTGATAAGGAACACAGTGATAGAGGTCACATGTGTGACTCGTGTGggaagaaattttcaacaaaggGCAATCTCAAAACCCACGTCAACTCAATGCATAATGGTACGAAACATACATGCGATGATtgcgaaaaatcatttacacaGAAAGCTCacctcaaaatccacatcgactcggtgcataatggtactAAATATAAGTGCGAAGGATGCGGAAAAGCCTTTAAACAGAAaggttatctcaaaatccacatgaACTCGGTACATAATCACATCACTCATCCATGTGACatatgtaaaagaaaattcgcAAATAAGCGTACTCTCAAAAGCCACATCGATAAGGTGCATCATAAAATCACTCTTGCATGCAAtttttgcggaaaaaaattctcaactaAGAGAAATCTCAAAGTCCACATGGATATGGTGCATTATAAAATCACTCATGCATGCAATTTTTGCGGAAAGAAACTCTCAACTAAGAGAAATCTCAAAGTCCACATGGATATGGTGCATTATAAAATCACGCACGCATGCGATTtgtgcggaaagacattcgcaagtaagagtaatctcaaaatccacatcaaTGCCAAGCATAAAAGTAACACTCGCACCTTTGATTCATGA
Protein Sequence: MKYSEDYKTQPTIKTETPVKKECFSDETTKLYSDCELRAQNEKRSPVDKEHSDRGHMCDSCGKKFSTKGNLKTHVNSMHNGTKHTCDDCEKSFTQKAHLKIHIDSVHNGTKYKCEGCGKAFKQKGYLKIHMNSVHNHITHPCDICKRKFANKRTLKSHIDKVHHKITLACNFCGKKFSTKRNLKVHMDMVHYKITHACNFCGKKLSTKRNLKVHMDMVHYKITHACDLCGKTFASKSNLKIHINAKHKSNTRTFDS

Sequence clustering based on sequence similarity using MMseqs2