Tpre005936.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1336522-1339245[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.066 4.9 6.8 1.5 18 43 334 356 331 357 0.91 2 10 0.0014 0.1 12.1 2.0 1 43 346 385 346 389 0.90 3 10 0.016 1.2 8.7 1.6 2 43 376 414 375 418 0.87 4 10 6.9 5.1e+02 0.3 3.4 3 39 406 439 404 446 0.75 5 10 0.087 6.5 6.4 4.8 6 43 438 472 433 473 0.88 6 10 0.019 1.4 8.5 1.5 1 40 462 498 462 501 0.81 7 10 0.00023 0.017 14.6 2.1 6 43 496 530 491 531 0.92 8 10 0.017 1.3 8.6 1.1 3 43 522 559 520 560 0.82 9 10 0.13 9.5 5.8 2.2 6 43 554 588 549 589 0.81 10 10 0.0021 0.15 11.6 3.5 2 43 579 617 578 618 0.92
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAAAGGACTTAGTTAGCGTTGAAGAGGAGCATCGTGACAATTGGGAAGATGTAGCCGACGTGAGTGTTAATCCGGGGTTCTTGGTGAAAACTGAAAACTCTGAAGAATCATCGTCGAATGAGTCATCAGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGGAGGAAAATCCGGGGTTCTCggtgaaaactgaaaaatctGGTGAATCATCGACGAGTGAATTATCGgcaaatccCAATAATGACTCTATGGTGAAAGCGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGCGTCGATCTGGGGTTCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGTTACTGTAAAGGAGGAAAATCCGGGGTTCTCggtgaaaactgaaaaatctGGTGAATCATCGACGAGTGAATTATCGgcaaatccCAATAATGACTCTATGGTGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGCGTCGATCTGGGGTTCTCGGTGAAAACTGAAAACTCTGATGAGTCATCGTCGAATGAATCTTCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGAAAGATGAGGATATTTTGATAGATTGTGAGAGCTCATTGGTGAAACTTGAACCTAAGCCCTCATTGACGACCATGTACCAAGCTACGATtgtaaaggaagaaaatcCAGCAAAAGATTTTAATAGAAAGAagcttacaattttaataaaaaaaggattcagTTACGATAGTAATCGTAAATTTACCGGAGAAGAAGCGACTTCAACAAGCCAAATGAAAACCACACACAAGGGCATTGGACCacttgaatgtgaaatttgtcataaatcgtTTAAATATCCAAGTAAACTTAAAAGCCACGTTAATgaagtacatgataaaaaaaaaccttttcagtgtgatatttgccatgAATCATTTGCACGAAAAgataatctcaaaattcacatcagTATAGTCCATGAACGcagcaaaccttttgagtgtCAGTTTTGTCACAAagcatttggactaaaaagtGACCTTAAAAGACATATAAgtgtagtacataatcggagcaaaccctttgagtgtgagatttgtaatgaatcatttggacaaaaagttaCTCTTAAATATCACATCAGTATAGTCCACGAATGCAGAAAACTTTTTGAGTGTCAGTTTTGTCACAAagcatttggactaaaaagtGTCCTTAAAAGACATAtaagtgcagtacataatcagagcaagcccttcgagtgtgatatttgtcacaaatcatttggacgaaaaagtcACCTCGCAATTCATATTCAGGCAGTACACCTTCGGAGTAAATcctttgagtgtgatatttgtcataaatcatttgcacGAAAAGATGGTCTCAAAAAGCACGTAAGTAAAGTCCACGAACGcagcaaaccttttgagtgtCAGTTTTGTCACGAAGCATTTGTACTAAAAAGTGACcttaaaatacatataagtgcagtacataatcagagcaaaccttttgagtgtGAGTTTTGTCACAAagcatttggactaaaaagtGACCTTAAAAGACATATAAGTGCaatacataatcggagcaaacccttcgagtgtgacatttgtcacaaatcatttggacggaATAGTAGTCTCAAGAAACACATCAATACAGTACATCTTCGGAGTTAA
- Protein Sequence
- MESKKDLVSVEEEHRDNWEDVADVSVNPGFLVKTENSEESSSNESSDEISIELETENVKLEPKPSLTTICQATVKEENPGFSVKTEKSGESSTSELSANPNNDSMVKAEPRDNCEDVADVSVDLGFSVKTENSEESSSNESSDEISIELETENVKLEPKPSLTTICQVTVKEENPGFSVKTEKSGESSTSELSANPNNDSMVKEEPRDNCEDVADVSVDLGFSVKTENSDESSSNESSANPTNDCISSQQKKDEDILIDCESSLVKLEPKPSLTTMYQATIVKEENPAKDFNRKKLTILIKKGFSYDSNRKFTGEEATSTSQMKTTHKGIGPLECEICHKSFKYPSKLKSHVNEVHDKKKPFQCDICHESFARKDNLKIHISIVHERSKPFECQFCHKAFGLKSDLKRHISVVHNRSKPFECEICNESFGQKVTLKYHISIVHECRKLFECQFCHKAFGLKSVLKRHISAVHNQSKPFECDICHKSFGRKSHLAIHIQAVHLRSKSFECDICHKSFARKDGLKKHVSKVHERSKPFECQFCHEAFVLKSDLKIHISAVHNQSKPFECEFCHKAFGLKSDLKRHISAIHNRSKPFECDICHKSFGRNSSLKKHINTVHLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485265;
- 90% Identity
- iTF_01485265;
- 80% Identity
- iTF_01485265;