Tpre004332.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:261202-263391[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.01 15.3 0.5 14 44 156 183 151 183 0.89 2 12 0.85 63 3.2 2.1 16 43 186 210 183 211 0.75 3 12 0.093 6.9 6.3 2.8 18 44 216 239 205 239 0.88 4 12 0.069 5.1 6.7 2.3 18 43 244 266 241 267 0.75 5 12 6.4 4.7e+02 0.4 1.4 18 27 272 281 260 299 0.76 6 12 0.87 65 3.2 2.8 16 29 297 310 284 322 0.72 7 12 0.014 1.1 8.9 3.5 18 44 327 350 311 350 0.88 8 12 4.1 3e+02 1.0 1.5 19 43 356 377 352 378 0.76 9 12 8.4 6.3e+02 -0.0 4.6 18 43 383 405 372 412 0.85 10 12 0.31 23 4.6 0.9 19 44 412 434 405 434 0.91 11 12 0.0009 0.067 12.7 2.3 1 44 423 462 423 462 0.87 12 12 0.0013 0.098 12.2 2.2 15 43 463 488 460 489 0.91
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGGAGGAACCAAATAATGTTTCCccaattgaaaatgaagattataTGATAATTGACAATGCAGGCAATGCTAAAACCGACGAATTCTCGAGtttttgtcgagaaaatttaATTCATGGACTTAAAgaatatgatgaaaattctGGACCTAATGACAATTTGGAAATAGAATTCGAATGTAAGGACCAGAAGCTCGGCATTGACTTATTAGTAGTTAAGAAAATCGAGGACGATTATCCAGATCATTTgcagtatatgaaaaatagttgcgATTATCagactcaaaagaaaattaaagaagaaatcgTCGACGAAGTAAAAGAGGAATTGAATTCGGATGGTGAACTCAATGATGCATttgatgcaaatgaaaaaacatttgctcaaaaaAGTCTATGCAAAACCCAAACTGATGGGGCAAGCAATCGTACCAAATATCCATGTAATGTatgcggtaaaaaattttcacgaaaaggtaatctcaagattcacatcgattcagttCATAGTGACGTCAAGCATACGTGTGATAcgtgtggaaagacattcacacaaaaaggacatctcaaaattcacatcaatgcgatgcataatggtatggcacctacttgcgaaatatgcggaaagaaattgcAAACGAAGACTAAACTCAAGattcacatcgattcagtacataatggtattAAACATGAGTGTGgtatatgtggaaagacataCGCACAAAAAGGTCATCTCAAATTTCACATcaatgcgatgcataatggtatggcaccAACATGCGAagtgtgcggaaagaaattcctAACCGAGAGTTCACTCAAGCTTCATATCGATGCACacaatggtgttaaacatccatgtaatatatgtggtcaaaaattttcacaaaaatgttatctcaaaattcacatcgatgcgatgcataatggtgtggcacctacttgcgaaatgtgcggaaagaaattctcaactAAGACTAAACTCAAACGCCACATGGATGCAGTGCATAATAAGATAACTCACGCGTGTGGTAcgtgtggaaagacattcacactcAAATGTactctcaaaatccacatcgatgcgatgcataatggtatggcacctacttgcgaaaTATGTAGTAATACATTTGCACATAAGAGTAGTCTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTAGCAAAATATTTACGCTGAAAGATAATCTTAAGAAACACATCGATGCGGCGCATAAAggtatggcacctacttgcgaagtgtgcggaaagacattctcactaaagggtaatcttaaaaaacacatgaatTTGATGCATAATAAGACCACTTATTGTAATACTTGCGGCAagatattttcacaaaaggaTCGTCTTATAATTCACATTAGAACACAGCATGGAGATATTGATCATGCAAGTGTTtaa
- Protein Sequence
- MDFSDVYNSDVRVKEEPNNVSPIENEDYMIIDNAGNAKTDEFSSFCRENLIHGLKEYDENSGPNDNLEIEFECKDQKLGIDLLVVKKIEDDYPDHLQYMKNSCDYQTQKKIKEEIVDEVKEELNSDGELNDAFDANEKTFAQKSLCKTQTDGASNRTKYPCNVCGKKFSRKGNLKIHIDSVHSDVKHTCDTCGKTFTQKGHLKIHINAMHNGMAPTCEICGKKLQTKTKLKIHIDSVHNGIKHECGICGKTYAQKGHLKFHINAMHNGMAPTCEVCGKKFLTESSLKLHIDAHNGVKHPCNICGQKFSQKCYLKIHIDAMHNGVAPTCEMCGKKFSTKTKLKRHMDAVHNKITHACGTCGKTFTLKCTLKIHIDAMHNGMAPTCEICSNTFAHKSSLKLHMDAVHNKITHACDTCSKIFTLKDNLKKHIDAAHKGMAPTCEVCGKTFSLKGNLKKHMNLMHNKTTYCNTCGKIFSQKDRLIIHIRTQHGDIDHASV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485208;
- 90% Identity
- iTF_01485208;
- 80% Identity
- iTF_01485208;