Tpre007955.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:169761-171850[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.99 9.0 4.1 14 43 161 187 146 194 0.84 2 12 0.24 18 5.0 2.5 16 43 218 242 208 247 0.80 3 12 5.5 4.1e+02 0.6 3.9 18 44 248 271 237 271 0.83 4 12 0.11 8 6.1 0.6 18 43 276 298 272 299 0.82 5 12 0.046 3.4 7.3 1.2 19 43 305 326 302 327 0.73 6 12 7.5 5.6e+02 0.2 0.9 19 29 333 343 330 355 0.72 7 12 0.044 3.3 7.3 0.9 18 43 360 382 349 383 0.81 8 12 0.00079 0.059 12.9 1.6 16 44 386 411 384 411 0.92 9 12 0.013 0.99 9.0 0.6 15 44 413 439 412 439 0.90 10 12 0.048 3.6 7.2 0.8 15 43 441 466 439 467 0.79 11 12 0.1 7.6 6.1 0.6 17 44 471 495 466 495 0.85 12 12 0.02 1.5 8.4 1.0 15 44 497 523 495 523 0.89
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGATATATTTGACCGTGCTGTCAGGGTAAAAGAAGAGACTAGTGATGAGTCGCTGCTTCAAAACTATAACGAGATGATTGACGAGAAACCCGATTTGAACAACTTCCAACTCTCGCCATTTCTGCAAGAAACTTCCattCATACCATTCGAAAATGTGACATTAAACTTGAAAGTGAACTTGACAACGAAGTAGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACTTTGATTCATTGACGATACGGAAAATTGgcgatgattttcaaaattgtttgcgCACAGTGAAAAATACGATTAAAAAAGAACCCTCGGAGAAAGTGAAACAAGAAAATGTTAGTGATACTGCCGaacaattgaatttaaatctcGACTGTGAACTTGCcgagcaaagtaaaaaaaggagaatatCAAAAATGTCTGACCATCAACATAAAATCAAAACTCAGATTGATACGATGCACAATGGTAACATTTATACGTGTGAaacatgtggaaagacatttaaGCAAAAATCTAATCTCAAAACCCATATCGATGCGATACACAATGTCACTCACTCGTGTGATATttacggaaaaaaattgtcaacaaAAACGTATCTTCAAATGCAcattgattcagtgcataatggtgtcaaaTATGTATgtgaaatttgcaaaaaaatattcacactAAAGAGTAGTCTACAAATCCACGTCAACTCGGTGCACAATAACATCATTCatacatgcgatatatgcTTGAAgacatttacacaaaaaggtTATCTTAAAATTCACATCAATTCAAggcacaatggtgtcaaatATGCTTGTGAAAAATGTGGCAAgaaatttcaacgaaaaagttatctcaaaatccatatCGATTCTATACACAATGGGATTACCTACTCTTGTAATATTTgtgaaaagattttttccacaaaaggtcatctcaaaatccacgtCGATTCcatgcacaatggtgtcactcACTCTTGTGATATTTGCGACGGTACATATAAAAGAAAGTGTGAATTGAATTGGCACGTTCAATCAGCACATGATGGTGTCACTCATTCATGTGttatttgcggaaagacattctcaaGAAATTGGtatctcaaaacccacatcgattcagtgcacAATGGGATTAAATATACGTGCAGtatatgcggaaagacatttacACATAAAGGTAATCTTAAAACACACATCGATTCAATGCACAATGGGACcaaacatgcatgtgatatttgcggaaagtcatttacTCAGAAAAGTAGTCTTCaaacccacatcgattcgatgcaCAATGGAACcaaacatgcatgtgatatttgcggaaagtcATTCTCAAGAAATTGGtatctcaaaacccacatcgattcagtgcacAATAAGGTCaaatatgcatgtgatatttgcggaaagtcATTTCCATACAAAATTagtcttaaaaaacacatcgattcaaTGCACAATGGGACcaaacatgcatgtgatatttgcggaaagtcatttacTCAGAAAAGTAGTCTTCAAACCCATATTGAATCGACGCATAATGGGACTAAACATTCTTGTGGTTAA
- Protein Sequence
- MESSDIFDRAVRVKEETSDESLLQNYNEMIDEKPDLNNFQLSPFLQETSIHTIRKCDIKLESELDNEVEIVVECEDVKPNFDSLTIRKIGDDFQNCLRTVKNTIKKEPSEKVKQENVSDTAEQLNLNLDCELAEQSKKRRISKMSDHQHKIKTQIDTMHNGNIYTCETCGKTFKQKSNLKTHIDAIHNVTHSCDIYGKKLSTKTYLQMHIDSVHNGVKYVCEICKKIFTLKSSLQIHVNSVHNNIIHTCDICLKTFTQKGYLKIHINSRHNGVKYACEKCGKKFQRKSYLKIHIDSIHNGITYSCNICEKIFSTKGHLKIHVDSMHNGVTHSCDICDGTYKRKCELNWHVQSAHDGVTHSCVICGKTFSRNWYLKTHIDSVHNGIKYTCSICGKTFTHKGNLKTHIDSMHNGTKHACDICGKSFTQKSSLQTHIDSMHNGTKHACDICGKSFSRNWYLKTHIDSVHNKVKYACDICGKSFPYKISLKKHIDSMHNGTKHACDICGKSFTQKSSLQTHIESTHNGTKHSCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485101;
- 90% Identity
- iTF_01485101;
- 80% Identity
- iTF_01485101;