Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.7 2.7e+02 1.2 0.2 21 39 119 141 118 150 0.79

2 8 0.034 2.5 7.7 1.8 18 43 155 177 146 178 0.84

3 8 0.00015 0.011 15.2 1.8 6 43 172 205 167 210 0.82

4 8 0.063 4.7 6.8 1.8 19 43 214 235 206 236 0.87

5 8 0.17 12 5.5 0.5 19 43 242 263 239 264 0.86

6 8 0.043 3.2 7.3 1.3 18 43 269 291 267 297 0.83

7 8 0.045 3.3 7.3 1.3 18 43 297 319 282 320 0.76

8 8 0.17 12 5.4 0.3 19 43 326 347 324 348 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.7	2.7e+02	1.2	0.2	21	39	119	141	118	150	0.79
2	8	0.034	2.5	7.7	1.8	18	43	155	177	146	178	0.84
3	8	0.00015	0.011	15.2	1.8	6	43	172	205	167	210	0.82
4	8	0.063	4.7	6.8	1.8	19	43	214	235	206	236	0.87
5	8	0.17	12	5.5	0.5	19	43	242	263	239	264	0.86
6	8	0.043	3.2	7.3	1.3	18	43	269	291	267	297	0.83
7	8	0.045	3.3	7.3	1.3	18	43	297	319	282	320	0.76
8	8	0.17	12	5.4	0.3	19	43	326	347	324	348	0.91

Coding Sequence: ATGTATTCCTGTGATGCTTTTAACTGGGCCGTAAgagtgaaaaaagaacgGCGAGACGATTCGTTTGATGAAAACGATTACAACGTAATTGACGAGAAACCCAATAtccaaaatattcattttccaAGATATCTGCGAGATAATTCAACCCCATGGCTTCGAGAAAATGACGAAAACTCTAAACTCGGCAGTGagttaaaaatagaatttgaaTGTGAAGACGTAAAGCTGGGCAAGAATTTATTAGCAGTTGAGAAAATTGAGGATTGTTCTAAAGATGACAGTAACgattatcaaattaaaaaaaaaattaaaatagaaccCGTGActgagatgaaaaaagaagtgaaTCCTCATTGCAACAATGAACTCACCCAAACACGTGATACACTTGAAGAGACAGTAACTCGAAAAAATCATCTAAATCAGCCCGTCGAATCATCGCATCGTAGTATCACtcacgcatgcgataagtgcgggaaaaaatattcaagtaagAATGTTTTGAAAGCACACATTGATGCGACACATAAAGGTGTCAAATATGTGTGCGATATATGCGAAAAGGAATTTTCAGTCCGATCCAATCTCATCCGGCATGTCAAAGCTATACATCATTGTTACCGTGTTACCCACGCATGtaatatatgccaaaagacatacTTAGACAAgggtaatctcaaaaaacacattgatgtggtacataatggtgttacccacgcatgtgatgtatgcagaaagaaattttcaaccaAGGGTAATCTCGAAAGACACATTGATGTggtacataatggtgtcacccatacttgtgatatttgccaaaaGAAATTCACAAACAAGAATAATCTGAAATTACACGTCGATATAGTGCACAATCGTGTCGCACACGCATGTGATGTTTGCGGAAAGACTTTTACACGTAAGAATGTACTCGAAGGCCACATTAGGGCGAGGCATAGTGGCTTGACATATCCGTGCGATGTTTGCAAAAAGGTGTTTTTATATCGAACCAATCTCTATAGACACGTTAGATTGTCACATATGGGTGATACTTAA
Protein Sequence: MYSCDAFNWAVRVKKERRDDSFDENDYNVIDEKPNIQNIHFPRYLRDNSTPWLRENDENSKLGSELKIEFECEDVKLGKNLLAVEKIEDCSKDDSNDYQIKKKIKIEPVTEMKKEVNPHCNNELTQTRDTLEETVTRKNHLNQPVESSHRSITHACDKCGKKYSSKNVLKAHIDATHKGVKYVCDICEKEFSVRSNLIRHVKAIHHCYRVTHACNICQKTYLDKGNLKKHIDVVHNGVTHACDVCRKKFSTKGNLERHIDVVHNGVTHTCDICQKKFTNKNNLKLHVDIVHNRVAHACDVCGKTFTRKNVLEGHIRARHSGLTYPCDVCKKVFLYRTNLYRHVRLSHMGDT

Sequence clustering based on sequence similarity using MMseqs2