Tpre008341.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1066228-1068264[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0058 0.43 10.1 0.9 18 44 160 181 148 181 0.91 2 9 0.13 9.3 5.9 1.2 19 44 187 209 183 209 0.91 3 9 0.088 6.5 6.4 0.4 19 44 215 237 213 237 0.94 4 9 2.9 2.1e+02 1.5 0.3 21 44 245 265 240 265 0.68 5 9 0.0077 0.57 9.7 0.8 18 44 270 293 265 293 0.91 6 9 0.031 2.3 7.8 0.5 19 43 299 320 295 321 0.87 7 9 0.014 1 8.9 1.0 19 43 327 348 322 349 0.88 8 9 0.29 22 4.7 0.1 19 31 355 367 352 377 0.85 9 9 0.11 7.9 6.1 0.4 18 44 382 405 373 405 0.91
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATCCTGCttttagagtgaaagtCGAGCCTTGTGATGTTTTGCTTACccaaaataattatgaaaccATCGACGCGATACCCGTAACTGAAAACGTCAAAAACGAAAggttttttcaagaaaactggACCCAAGAGTTTCAAGAAAATAAGCTTGACGACATTCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTGGCAGTTGCGAAAATAGAAGATTATTCTCCAAGTCAATGGCCGGATAGCGATGAGTATAAAACCAGAAGCACAATAAAAGTAGAAACTGTCGGGTCAgtgaagaaagaaattttgagagaaggagaaaatgatttaaatttaggACGTGGActcagcgagaaaaataaaaaaagcagtgTTTTGAAAGGGATGAACTATAAACATAGGCTAATAACTCAGATTGAATCAGTTCGTAATGCCAATATCAAACATGCATGTGGTACTTGCGGAAAAGTGTTCAAACGAAATCTCAATagacacatcgattcggtacatcgtaaaataagacatgcatgtgatatatgccaaaagacattcacacagaAAACGAAACTCAAAATCCACATAGATTCGGTACATCGTGAAATCACGCATCCATGCGatgtatgccaaaagacatacTTAGACAAGAGTactctcaaaaaacacatcgattcggtgcataatggggTCAGACATGCATGCAATATAAGTCAAAATTCGTTCTCAGGGAAGAATAGTCTAAGAaatcacatcgattcggtgcatcgtaaaataaggcatgaatgcgatatatgccaaaatACGTTCTCAAAAAAGAACAGTCTCAAACAACATATTGATTCCGTGCACAATCGAGTCCGACATGCGtgtgatatatgccaaaagacattctcagagAAAGGCACTCTCAAAACTCACGTCGATTCgatgcattataaaattatgcatcCATGTGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGaaaacacatcgatgcgattcACAATGGAATCACCCACGCATGTGatttctgtgaaaaaaaatttaaatatcaaagtGAAATTGCTagacataaaaaattgtcgcACAATGGTATTATACATTCATGCGAGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATTCCTCGCTCAATAAGTCccaataa
- Protein Sequence
- METSGLFNPAFRVKVEPCDVLLTQNNYETIDAIPVTENVKNERFFQENWTQEFQENKLDDIQIELECTDMKPNLLAVAKIEDYSPSQWPDSDEYKTRSTIKVETVGSVKKEILREGENDLNLGRGLSEKNKKSSVLKGMNYKHRLITQIESVRNANIKHACGTCGKVFKRNLNRHIDSVHRKIRHACDICQKTFTQKTKLKIHIDSVHREITHPCDVCQKTYLDKSTLKKHIDSVHNGVRHACNISQNSFSGKNSLRNHIDSVHRKIRHECDICQNTFSKKNSLKQHIDSVHNRVRHACDICQKTFSEKGTLKTHVDSMHYKIMHPCDVCQKTFSNRSNLRKHIDAIHNGITHACDFCEKKFKYQSEIARHKKLSHNGIIHSCETCGKTFGQKRNLRAHIDMAHSSLNKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485503;
- 90% Identity
- iTF_01485503;
- 80% Identity
- iTF_01485503;