Tpre008287.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:266775-268521[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 0.9 9.1 3.4 24 44 146 166 144 166 0.85 2 11 1.6 1.2e+02 2.3 0.2 19 43 172 193 167 194 0.79 3 11 0.011 0.81 9.2 2.8 2 43 184 221 183 222 0.73 4 11 0.2 15 5.2 1.5 17 44 226 250 222 250 0.89 5 11 0.052 3.9 7.1 0.6 18 43 255 277 252 278 0.79 6 11 0.45 33 4.1 0.8 18 40 283 302 280 312 0.82 7 11 0.00089 0.067 12.7 3.0 19 43 313 334 304 335 0.92 8 11 0.0002 0.015 14.8 1.2 1 43 324 362 324 363 0.88 9 11 0.15 11 5.6 1.2 18 44 368 391 365 391 0.93 10 11 1.2 87 2.7 0.5 18 39 396 414 394 423 0.70 11 11 2 1.5e+02 2.0 1.0 19 41 425 444 413 448 0.77
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGATACACTTAATTATGCTGTGAGAGTAAAAGAGGAGCCTAGCGATGAGCCACTTATTGGAAATGATTTTGAAGTAAACAACGAGAAACCCGATCTTAAAAACTTCCAACTCGTACTACATCCGCGAGAAAAGTCGaCTTATACTCTTCAAAAAAGTGAAGGGAAGCATGATACTGAATTAGATGACGAAGTGGAAATAGTCGCTGAATGTAAAGACTTGAAGCCCAATATAGAATTAGTAgttgctaaaaaaattgatgatgattttcaatatcacctgcaaaatatgaattatagTGATGGTAGTAAAACTAaaactataattaaaatagaaactaCGGATGAAGTAAAACAGGAACTTTTTGCTGGAGTTTCAGACAAGTTGAATTTTGACTGTGAGCCTGGcttacgaaataaaaaaaggaaaattacaAACAAGGGTAACAACGAACATAACCTAAAAAGACACATTCGAACGGTGCATAATGATGACATGCACGATTGTGATATTTACGGGAAAAAATACTCAACTAAGgataatctcaaaaaacacatcgactCACTACATGATGGAATcacacatacatgtgatatttgcggaaagaaatacTCTGCAAAAAGTAGTCTCAAAATACACGTCGATGGAAAACATAATGGTGTCAAACATAAGTGTGATGTTTGcagaaagacattttcactaAAAGCTtatctcaaaaatcacatcgattcgatgcacaatggtgtgtcacatacatgtgatatttgtgaaaaaacaTTCGCAAATAAAGGCAGTCTCAAAAAACACGTCGATGGAAAACATAATGGTGTGAGACATGAATGTGATGTTTGTGGAAAGTCATTTACCCTTAAATCTACTCTCAAAACCCACATAGATttgatacataataatgtatcTCATCATGCATGtaatatttgcggaaaaaaatactcaaataaggataatcttaaaaaacacgTCGACTCGCTACACGATGGAATCTCTTATAcctgtgatatttgcggaaagaaatacTCTGCAAAGAGTAGTCTCAAAAAACACGTCGATGGAAAACATATTGGTGTCAGACATGAATGTGATGTTTGCAGAAagtcattttcattaaaagctaatctcaaaattcacatcgattcgaAGCACAATGGTGTCAGACATACATGTGATGTATGTGGTAAGTCATTCTCACTAAAAGGTAGTCTGAAAATTCACATAGATAAAGTACACAATGGTATCAGACATGCATGTGATGTATGTGGTAagtcattttcacaaaaaagttaTCTGAAAATCCACATAGGTGAAGTGCACAATATAGTGTCAGACATGCatgaaatatttgtaaaaaaaattcaaaactaa
- Protein Sequence
- MESSDTLNYAVRVKEEPSDEPLIGNDFEVNNEKPDLKNFQLVLHPREKSTYTLQKSEGKHDTELDDEVEIVAECKDLKPNIELVVAKKIDDDFQYHLQNMNYSDGSKTKTIIKIETTDEVKQELFAGVSDKLNFDCEPGLRNKKRKITNKGNNEHNLKRHIRTVHNDDMHDCDIYGKKYSTKDNLKKHIDSLHDGITHTCDICGKKYSAKSSLKIHVDGKHNGVKHKCDVCRKTFSLKAYLKNHIDSMHNGVSHTCDICEKTFANKGSLKKHVDGKHNGVRHECDVCGKSFTLKSTLKTHIDLIHNNVSHHACNICGKKYSNKDNLKKHVDSLHDGISYTCDICGKKYSAKSSLKKHVDGKHIGVRHECDVCRKSFSLKANLKIHIDSKHNGVRHTCDVCGKSFSLKGSLKIHIDKVHNGIRHACDVCGKSFSQKSYLKIHIGEVHNIVSDMHEIFVKKIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485277;
- 90% Identity
- iTF_01485277;
- 80% Identity
- iTF_01485277;