Tpre010989.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:133860-135533[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.72 54 3.4 1.5 18 29 149 160 134 175 0.81 2 10 0.016 1.2 8.7 0.1 18 43 177 199 162 205 0.86 3 10 0.047 3.5 7.2 1.8 3 29 191 216 189 232 0.73 4 10 0.1 7.5 6.2 0.5 17 44 232 256 216 256 0.86 5 10 0.0023 0.17 11.4 2.2 19 44 262 284 257 284 0.93 6 10 0.21 16 5.1 1.3 19 44 290 312 287 312 0.90 7 10 0.083 6.2 6.4 0.2 19 44 318 340 315 340 0.94 8 10 0.013 0.97 9.0 2.5 19 44 346 368 342 368 0.93 9 10 0.019 1.4 8.5 4.1 19 43 374 395 370 396 0.94 10 10 0.043 3.2 7.4 0.7 14 43 432 458 421 459 0.87
Sequence Information
- Coding Sequence
- atgtatttcagagtgaaaaatGAGGCACTCGATGATTatgattacaaaataattaacagGATACCCGTTACTCAGAATATTAAATACGAAAGGATTTGGCAAGGAAATTCAgacCAAATGATTCAAGAATATGtcgaaaatcatgaaaatgaacttGACGACCTGGAAATCGAAATAGAATGTACAGACATGAAGCCCAATTTTTTGGCGGTggcaaaaattgaagattgTTCTAAAAATCAGAAGGATAGCGATGAGTATAAAACAGGAAACAAAGTCAAATTAGAAAACGTCGGGACAGTAAAGAAAGAAATGTTAAATGAAGAAGTATTTGACTCTGCACATAATGGAATCACACCTGCATGTTATAATTCCGGAAAATCATCCAGGCAAAAGACTCATCTGAAAGTCCACATTGATACAGTCCACAAGGATGTCACATACGCATGTGAAATATGCGGAAATGTATTCAAACGAAGAGGTTATCTCAAGAAGTACATCGAtacggtgcataatggtgtttCCTATGCGTGTGATgtttgtggaaagacattcaatCGAAAAGATCCTCTCAAACagcacatcgattcggtacatcataaaattatgcaTCCTTGtaatatatgccaaaagacatatTCAGACAAGTATTATCTTACAATCCACATCGATGCCGTGCATAATCAAGTCAAACACGCATGTGATTCATGTGGAAAGACTTTTCCAAGGAAAAATGATCTCCAAAGACACATCGCTTCGGTACATCGTAAAATCATGCATCCATGctatatatgccaaaagacattctcagcCAAGAGTAATATCAAAAAGCACATCGATTCGAAGCATAATGGTGTTagacatgcatgcgatatttgcgaaaagaaattcacaaCGAACTATAATcttaaaatccacatcgaCTCGGTGCATCGTAAAATCACGCATCCATGCGATGTATGCCcaaagacattctcagacaAGAGTAGTCTTAGGAAGCACATCATTTCGGTGCATAATAGTGTCCGACATTCGTGCAATacatgccaaaagacattttcaGACAAGAGTAGTCTTAGGAAGCACATCATTTCGGTGCATAATAGTGTCCGACATTCGTGCAATacatgccaaaagacattttcaGACAAGAGTTATCTCAAACGTCACATGGATTCGATGCATCATAAAATTACGCATCCATGCGATACATGTGGAGCAACATTCATACGAAAAATTCATCTCCAAAACCATATTGACGTAGTACACAATGTCAACAAATTGTCTCATAATGGCACCACTTATTCATGCGCGACATGCGCAAAGACATTcggacagaaaaaaaatcttaaagcTCATATCGACACGGCGCATATTAAGTCACGTAATCAGACctga
- Protein Sequence
- MYFRVKNEALDDYDYKIINRIPVTQNIKYERIWQGNSDQMIQEYVENHENELDDLEIEIECTDMKPNFLAVAKIEDCSKNQKDSDEYKTGNKVKLENVGTVKKEMLNEEVFDSAHNGITPACYNSGKSSRQKTHLKVHIDTVHKDVTYACEICGNVFKRRGYLKKYIDTVHNGVSYACDVCGKTFNRKDPLKQHIDSVHHKIMHPCNICQKTYSDKYYLTIHIDAVHNQVKHACDSCGKTFPRKNDLQRHIASVHRKIMHPCYICQKTFSAKSNIKKHIDSKHNGVRHACDICEKKFTTNYNLKIHIDSVHRKITHPCDVCPKTFSDKSSLRKHIISVHNSVRHSCNTCQKTFSDKSSLRKHIISVHNSVRHSCNTCQKTFSDKSYLKRHMDSMHHKITHPCDTCGATFIRKIHLQNHIDVVHNVNKLSHNGTTYSCATCAKTFGQKKNLKAHIDTAHIKSRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485195;
- 90% Identity
- iTF_01485195;
- 80% Identity
- iTF_01485195;