Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0033 0.24 10.9 2.2 18 44 149 172 140 172 0.90

2 7 0.16 12 5.5 1.4 19 31 178 190 175 204 0.71

3 7 0.00047 0.035 13.6 2.8 18 44 205 228 194 228 0.90

4 7 0.16 12 5.5 0.5 18 43 233 255 231 256 0.71

5 7 0.07 5.2 6.7 2.4 17 33 260 283 250 288 0.68

6 7 0.045 3.3 7.3 4.5 18 44 289 312 283 312 0.90

7 7 0.48 36 4.0 1.8 18 30 317 329 315 340 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0033	0.24	10.9	2.2	18	44	149	172	140	172	0.90
2	7	0.16	12	5.5	1.4	19	31	178	190	175	204	0.71
3	7	0.00047	0.035	13.6	2.8	18	44	205	228	194	228	0.90
4	7	0.16	12	5.5	0.5	18	43	233	255	231	256	0.71
5	7	0.07	5.2	6.7	2.4	17	33	260	283	250	288	0.68
6	7	0.045	3.3	7.3	4.5	18	44	289	312	283	312	0.90
7	7	0.48	36	4.0	1.8	18	30	317	329	315	340	0.71

Coding Sequence: ATGGAATTCAGTGGTTTATTCAATTGTCCCATCACAGTGAGAGACGAACCTAGTGATTGGTCGCTTAGAGTAAATGAACCTGATGTGATTGATGAAAAACCCGATATTAAAGACGTCAAACTCTTGTCATTTCTAccagaaaattcaACTTACAGGCATCTAAAATGtgataaaaatcatgaaagtgaagtgaaaatagtttttgaatgtGAAGACGTCAAACCTAAAGTGGATTCGTCAGCAGTTAAAAAGATTGAAGATTATTCTAAAAATCACAGgcaatttatgaaatatgGCGATGTTTATACAAAtcttaaaatgattaaaatagaACCTTTTaatacagtaaaaaaattattgggcGAAGACAATGCAAACAAATTGAACATGAATTTGAACTGTgaccaaaataaaaaacgaaaagtgaaagaaaagTTAACCTACAACTGTGGTACATGTGGAAAAACGTTTAAACGGAAATCTCATCTAAAAACTCACGTCGTTTctgtgcataataaaattacttatgcatgtaatatatgcacgaaaacattcacacaaaaaggtAGTCTCcaaattcacatcgattcggtacataataaaattacccataaatgtgatatatgtatgaagacattcacacagaaaagtaacctcaaatcCCACATCGATTCATTGCATAATTGTATTACACATGAATGTGATGTATGCGGCAAGACGTTTTCACAAAAGGGTCAGCTCAATATGCATATCCAATTAAAGCATAAGGGTATCAAATAtccatgcgatatatgcggaaagactTTTACACGCAAGTATTATCTCCGagtccacatcgattcggtccataataaaattactcataaATGTGATATATGTATGAAGACATTCACACATAAAAGTAGCCTCAAATCCCACATCGATTCATTGCATAATTGTATTACACATGAATGTGATGTATGCGGCAAGACGTTTTCACAAAAGGGTCATCTCAATATGCATATCAAATTAAAGCACAAAGGTATCAAATAG
Protein Sequence: MEFSGLFNCPITVRDEPSDWSLRVNEPDVIDEKPDIKDVKLLSFLPENSTYRHLKCDKNHESEVKIVFECEDVKPKVDSSAVKKIEDYSKNHRQFMKYGDVYTNLKMIKIEPFNTVKKLLGEDNANKLNMNLNCDQNKKRKVKEKLTYNCGTCGKTFKRKSHLKTHVVSVHNKITYACNICTKTFTQKGSLQIHIDSVHNKITHKCDICMKTFTQKSNLKSHIDSLHNCITHECDVCGKTFSQKGQLNMHIQLKHKGIKYPCDICGKTFTRKYYLRVHIDSVHNKITHKCDICMKTFTHKSSLKSHIDSLHNCITHECDVCGKTFSQKGHLNMHIKLKHKGIK

Sequence clustering based on sequence similarity using MMseqs2