Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0027 0.2 11.2 1.7 14 43 164 190 157 191 0.83

2 7 0.39 29 4.3 0.7 19 38 197 213 194 220 0.76

3 7 0.47 35 4.0 0.7 16 43 222 246 212 247 0.84

4 7 0.0013 0.099 12.2 0.2 19 44 253 275 250 275 0.93

5 7 0.27 20 4.8 4.4 19 43 281 302 278 303 0.86

6 7 0.003 0.22 11.0 2.1 18 43 308 330 305 335 0.85

7 7 0.075 5.6 6.6 0.3 19 44 337 359 331 359 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0027	0.2	11.2	1.7	14	43	164	190	157	191	0.83
2	7	0.39	29	4.3	0.7	19	38	197	213	194	220	0.76
3	7	0.47	35	4.0	0.7	16	43	222	246	212	247	0.84
4	7	0.0013	0.099	12.2	0.2	19	44	253	275	250	275	0.93
5	7	0.27	20	4.8	4.4	19	43	281	302	278	303	0.86
6	7	0.003	0.22	11.0	2.1	18	43	308	330	305	335	0.85
7	7	0.075	5.6	6.6	0.3	19	44	337	359	331	359	0.90

Coding Sequence: ATGGAATCTAATAGTTCGCTTAACTATGCTGACAGAGTGAATCAGAAGTCAAGAGATGTGCCActtattgaaaatgatgatgaatTGATTGACGAGAAACCCGATAGTAAGGACTTCCAACTCTTACCACATCACCCAAAAGTTTCTACTTATATGCTACGGAAATGTGACATTAAACTTGAGAGTGAACTTGTTGAAGAAATGGAAATAGTTTTCGAGTGTGAAGACGTCAAGCCCGAAAGGAATTTATTAGCAGTTCAGAAAACTGacgattattcaaaaaataaaaatatgagaaaTGTCGATGATTATAAAACTCAAGACATAATTAAATTAGAACCCTCAGGTGAAGTGAAACAAGAATTTGTTGATTGCACTGACACAGCAGaagaatcaaatttgaatttcgaccgagaacaaaataaaacaaggggattaacaaaaaaatgtaaaaacgataataacctaaaaaaaaagattggtACGGTGCACACTGGTGTCacatgtgatatatgcagaaagaaattttctcgGAAGGatcatctcaaaatccacattgattcagtgcataGTGGTGTCAcatatgcatgtgatatttgcggaaataAATTGACGACAAAAAATAGTCTTAAAGTTCACATCGATTTGATGCACATTCGAGTGAAATATGCATGTGATACATGCGGCAAatcattttcagtaaaaagTTACCTTAAAACCCACATAGATATggtacataatggtgtcacataTGCGTGTGATGTGTGCGGAAAGAAACTTTCAAGTATCggtaatctcaaaactcacatagattcagtgcataatggtgttagacatgcatgtcatatttgcagaaaaaatttttcagagaaGTCTAGTCTTAATAATCACATTGATAATgcgcacaatggtgtcaaacATGCATGCCGtatttgtggaaaaaagtACTCAGATAGAAGTGGTCTCAAAAAACACAACGATTCGGTGCACAAACGAATcagacatgcatgtgatacATGCGGAAAGTCATTCACAAGAAAAGATtatctcaaaacccacatcgacTCGGCGCACAATGGTGTTTAA
Protein Sequence: MESNSSLNYADRVNQKSRDVPLIENDDELIDEKPDSKDFQLLPHHPKVSTYMLRKCDIKLESELVEEMEIVFECEDVKPERNLLAVQKTDDYSKNKNMRNVDDYKTQDIIKLEPSGEVKQEFVDCTDTAEESNLNFDREQNKTRGLTKKCKNDNNLKKKIGTVHTGVTCDICRKKFSRKDHLKIHIDSVHSGVTYACDICGNKLTTKNSLKVHIDLMHIRVKYACDTCGKSFSVKSYLKTHIDMVHNGVTYACDVCGKKLSSIGNLKTHIDSVHNGVRHACHICRKNFSEKSSLNNHIDNAHNGVKHACRICGKKYSDRSGLKKHNDSVHKRIRHACDTCGKSFTRKDYLKTHIDSAHNGV

Sequence clustering based on sequence similarity using MMseqs2