Tpre010342.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:171002-172872[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.73 55 3.4 1.6 30 44 157 171 149 171 0.78 2 8 0.048 3.5 7.2 3.0 18 43 176 198 172 199 0.91 3 8 0.037 2.8 7.5 2.6 19 44 205 227 202 227 0.94 4 8 0.0087 0.64 9.6 0.9 18 43 232 254 229 255 0.91 5 8 0.18 13 5.4 0.8 18 43 260 282 256 283 0.87 6 8 0.0029 0.21 11.1 0.1 18 44 288 311 284 311 0.93 7 8 0.00066 0.049 13.1 0.1 18 43 316 338 314 339 0.89 8 8 0.97 72 3.0 2.1 18 38 344 361 338 367 0.75
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGGTTTATTCAATGGTGCTatcagAGTAAAAGAGGAGCCTGCTGCTACTGATGTACCacttattgaaaatgaaggtGTAATGACTGACGAGAAACCTGATCTGGAAAACTTTCGACTCTTACCATTTCCTCGAGAAAATTCGGCGGTCGATACACTTCCAAAATGTGACATtaaacatgaaataaaatttgatgacgAAGTGGAAATCGTTGTTGAATGTGAAGACGTTAAGCCCAACAAGGATTTATtagaaattaagaaaattgacCATTATACCCCTAATCACTCGAGAAATGTAAAGGATATTCACGGTTGTGAaactaaaaatgtaattaaaatagaaacgGCAGAAGATGTGAAACAAGAATTTGTTGGTTACAATGTAGAAGAACCGAACTTGAATCTCGACTTTGAACTTGccgatcaaaataaaaaaaggggaataacaaaaaagttaaccaatgaacataacctcaaaacccacATGAGTACGGTGCATAGTGGTGCAGTCCATACATGCAAAACATGTGGAAAGACGTTTAAACACAAGTTTACTCTGAATAGACACGTTAAATCAAGGCATGATGGTGTTACACATGCATGCAATACGTGCGGAAAGTCATTCACTCAAAAAAGttatctcaaaactcacatcaatacagtacataatggtgtcaaATGTGCATGTGAcatatgcggaaaaaaatttacaagtaaGGCTAATCTCAgaatccacatcgattcggtgcactTAGGTACCACTCATGCATGTGATttgtgcgaaaagaaattcacaaAGAAGAGTATTCTTAAAGCCCACATCGATATAATGCACAATGATGTCGCACCTACTTGTGATACATgcagaaagaaatttttaacgaaaagcAATCTCAAACAACATATCGATTCGGCGCACAACGGTGTCACTcacgaatgtgatatttgtggaaagatattttcatataaaggtaatctcaaaactcacattgaCGCAGTGCATACTAAAATCACTCATGAATGTGTTGtatgtggaaagaaattcaaaagtaagaattatctcaaaatccatatCATTCCGGCGCACGATGGtgttaaataa
- Protein Sequence
- MESSGLFNGAIRVKEEPAATDVPLIENEGVMTDEKPDLENFRLLPFPRENSAVDTLPKCDIKHEIKFDDEVEIVVECEDVKPNKDLLEIKKIDHYTPNHSRNVKDIHGCETKNVIKIETAEDVKQEFVGYNVEEPNLNLDFELADQNKKRGITKKLTNEHNLKTHMSTVHSGAVHTCKTCGKTFKHKFTLNRHVKSRHDGVTHACNTCGKSFTQKSYLKTHINTVHNGVKCACDICGKKFTSKANLRIHIDSVHLGTTHACDLCEKKFTKKSILKAHIDIMHNDVAPTCDTCRKKFLTKSNLKQHIDSAHNGVTHECDICGKIFSYKGNLKTHIDAVHTKITHECVVCGKKFKSKNYLKIHIIPAHDGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485476;
- 90% Identity
- iTF_01485476;
- 80% Identity
- iTF_01485476;