Tpre004281.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:769153-771640[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.017 1.3 8.6 6.2 14 43 157 183 149 184 0.87 2 11 0.055 4.1 7.0 1.0 19 44 190 212 183 212 0.86 3 11 0.044 3.3 7.3 1.4 19 44 218 240 215 240 0.93 4 11 0.08 6 6.5 0.8 19 43 246 267 244 272 0.75 5 11 0.32 24 4.6 0.7 19 44 274 296 270 296 0.92 6 11 0.15 11 5.6 0.4 19 29 302 312 300 324 0.78 7 11 0.0045 0.34 10.5 0.5 18 44 329 352 315 352 0.85 8 11 0.72 54 3.4 3.8 19 43 358 379 355 381 0.74 9 11 0.044 3.3 7.3 0.7 18 39 385 403 383 412 0.74 10 11 0.091 6.8 6.3 1.2 18 30 413 427 409 440 0.73 11 11 0.012 0.9 9.1 1.2 18 44 441 464 430 464 0.89
Sequence Information
- Coding Sequence
- atgGAATCCAGTAATGTACTAAATGGTGTCATCAgAGTAAAACAGGAACCTACTGATATTTCGTTTATTGGAAAGGATTGTGAAACGATTGACAAGAAACCCGATTTCAAAAACATCCAACTCTTACCATTTCAgcgagaaaattcattccaaaatcatgaaaataaactCAATGACGATATggaaatagtttttgaatgtGAAGACGTTAAGTCCAATATGAATTTAttagaagttaaaaaaattgatgattattCTGCAAATCACTTACAAGAGATGAAGTATAGCAACGAGCATGAAtttaaaaacgaaattaaCATAGAAGCCACGGGGGAAGTAAAACGAGAAATTGTTGACGACGTTGTAGAGCAATTGAACTTCAATTTCGACTGTGCACTCGtcgaaaacaataaaacaagagaaattcaaaaaaagtgtAACAACGAACACAACCTGAAAAACAACATCGATACAACCCACGTATGTGAAATATGTGGaaagaaatattcaaaaaagtgTAATCTAAATAGGCATGTTAAAACACCGCATCATTTTATTACTCactcatgtgatatttgtggcaagacgttttcattaaaaagttatCTCAAATTTCACAtggattcggtgcataatggtatcacacatgcatgtgacaattgcggaaagaaattgaCAAGCAAGAGAAATCTCAAAGCCCACGttgattcggtgcataatggtatcacacatgcatgtgatatttgcggtaAGGAATACTCTATGAaaggttatctcaaaattcacattaaTACGGTACATAATGGCGTCACTCACTCATGTGATGTATGCGCCAAgacattttcattgaaatgtAATCTCAGATCCCACGTTGATTcggtacataatggtgttacaCGCGAttgtgatatatgcggaaaaaagTTCTCAAGCAAGGGTTATCTTAAAATCCACATTGATGAGGTGCACAATGGTGTTGCACGcgaatgtgatatatgcggaaaaaagtttggaagaaaaattaatctcaaaaaacacgtcgattcggtgcataatggtatcacacatgcatgtgatatttgcggtaAGAAATACTCAATGAAAGgtcatctcaaaatccacattgaTACGGTACATAATTGTGTTACACGCgtatgtgatatatgcggaaaaaagTTCTCAAACAAaggttatctcaaaatccacattgaTACGGTACATAATGGCGTTACACGcgaatgtgatatatgcggaaaaaagTTCTCAAGCAAGGGTTATCTTAAAATCCACATTGATGAggtgcacaatggtgttaCATGcgaatgtgatatatgcggaaaaaagtttggaagaaaaattaatctcaaaaaacacattgatGCGGTGCACAAGGATATCAAAtatgcatgcgatatttgcTGA
- Protein Sequence
- MESSNVLNGVIRVKQEPTDISFIGKDCETIDKKPDFKNIQLLPFQRENSFQNHENKLNDDMEIVFECEDVKSNMNLLEVKKIDDYSANHLQEMKYSNEHEFKNEINIEATGEVKREIVDDVVEQLNFNFDCALVENNKTREIQKKCNNEHNLKNNIDTTHVCEICGKKYSKKCNLNRHVKTPHHFITHSCDICGKTFSLKSYLKFHMDSVHNGITHACDNCGKKLTSKRNLKAHVDSVHNGITHACDICGKEYSMKGYLKIHINTVHNGVTHSCDVCAKTFSLKCNLRSHVDSVHNGVTRDCDICGKKFSSKGYLKIHIDEVHNGVARECDICGKKFGRKINLKKHVDSVHNGITHACDICGKKYSMKGHLKIHIDTVHNCVTRVCDICGKKFSNKGYLKIHIDTVHNGVTRECDICGKKFSSKGYLKIHIDEVHNGVTCECDICGKKFGRKINLKKHIDAVHKDIKYACDIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485248;
- 90% Identity
- iTF_01485248;
- 80% Identity
- iTF_01485248;