Tpre002908.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:6851-11513[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.3e-05 0.004 16.6 0.1 4 44 158 194 156 194 0.83 2 9 0.0021 0.16 11.5 1.7 19 44 200 222 197 222 0.94 3 9 0.016 1.2 8.7 0.9 19 44 228 250 225 254 0.81 4 9 0.97 72 3.0 0.3 19 29 256 266 251 278 0.79 5 9 0.99 74 3.0 0.1 19 43 284 305 282 306 0.83 6 9 0.011 0.81 9.2 1.8 19 44 312 334 307 334 0.92 7 9 4.1 3.1e+02 1.0 0.1 22 43 343 361 341 362 0.84 8 9 0.21 16 5.1 0.2 19 43 368 389 366 390 0.78 9 9 8.8 6.6e+02 -0.1 2.8 18 43 395 417 383 419 0.75
Sequence Information
- Coding Sequence
- ATGATATTTCCATCAAGTAAGATGGAATCGGGCAATCTATTCGATTCTACCgttagagtgaaaaaagaaccTTGGGACGATCATctcaatgataataatgatataattgaCACAACACCCGTTactcaaaatataaaatacgaaaGGTTTCGGCGAGAAAATTCAaatcaaATACATCAAGAATTTGACGGAAATCATGGAAATGAACTTGACGACCTGGAAATCGAAATGGAATGTACAGACATGAAGCCCAATTTATTGGCAGTTGCgaaaattgaagattattCTCCAAATCAATGGCCGGATAGCGATGAGTATAAAACTGGAAGCAAAATAAAACTAGAAACTGTCGCGACAgtgaagaaagaaattttaagcGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGCGAGCAAAATGAAACAGGAAGTGTTTCAAAAGAGTCGAACTATAAGAGGAGTCTCAAAGCACACGTGGGTATAGTGCAAAGTGGTATTAATaatgcatgcgatatatgccaaaaaaCATTATCAGACAAGGGTAATCTCAAAAGACACATGGATTCGGTGCATCGTAAAATAAGGCACGCTTGCGatgtatgccaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATTGATTCGGTGCATCGTAAAATAAggcatgcatgtgatatttgtggaaagacatttactCGAAAAGatcatctcaaaatccacatagAATCGGTGCATAATAGTGTCagacatgcatgcgatatttgtgaaaaaacaTTCACAACAAAGTATTATCTCCAAAACCATATCGATGCTGTGCACAATGGAATCGGCTTCGCATGTGAcgtatgtggaaagacataCATACAGAATAGTCAACTCAAAGTCCACATCGATGcaatgcataataatattactcacgcatgtaatatatgcggaaataaattcacacaaaaaattaatctcaaaaCCCATATCGAAGCTGAGCACAATGGAATCACCCATCCTTATGATATGTGCACAAAGAAATTTACTGCGAAAAGTAGTCTGAAAACCCATATCGATGCTGAGCACAATGGAATCACCCATCCATGTGatttctgtgaaaaaaaatttaaataccaaACTCAACTCAACAAGCACGTCAAATTTTCGCATAGTGATATCATACATTCATGCGAGACCTGCGGCAAGACATTcggaaagaaaagaagtcTCAGAGCTCACATCGATGTGGCACATCACCCACGCAATCAGACCTAA
- Protein Sequence
- MIFPSSKMESGNLFDSTVRVKKEPWDDHLNDNNDIIDTTPVTQNIKYERFRRENSNQIHQEFDGNHGNELDDLEIEMECTDMKPNLLAVAKIEDYSPNQWPDSDEYKTGSKIKLETVATVKKEILSEEETDLNFGRGLSEQNETGSVSKESNYKRSLKAHVGIVQSGINNACDICQKTLSDKGNLKRHMDSVHRKIRHACDVCQKTFSNRSNLRKHIDSVHRKIRHACDICGKTFTRKDHLKIHIESVHNSVRHACDICEKTFTTKYYLQNHIDAVHNGIGFACDVCGKTYIQNSQLKVHIDAMHNNITHACNICGNKFTQKINLKTHIEAEHNGITHPYDMCTKKFTAKSSLKTHIDAEHNGITHPCDFCEKKFKYQTQLNKHVKFSHSDIIHSCETCGKTFGKKRSLRAHIDVAHHPRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485354;
- 90% Identity
- iTF_01485354;
- 80% Identity
- iTF_01485354;