Tpre002599.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:151841-154437[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00039 0.029 13.9 1.0 12 43 154 182 143 183 0.85 2 12 0.012 0.93 9.1 0.8 18 44 188 211 185 211 0.87 3 12 8.1 6e+02 0.1 0.1 18 26 216 224 213 227 0.89 4 12 0.0053 0.4 10.2 1.0 16 43 241 265 228 270 0.78 5 12 2 1.5e+02 2.0 0.7 17 29 270 282 266 298 0.78 6 12 0.087 6.5 6.4 2.6 16 30 297 311 286 322 0.75 7 12 1.2 87 2.7 2.5 18 30 327 341 316 354 0.77 8 12 0.044 3.3 7.3 0.8 18 30 355 367 350 378 0.75 9 12 1.2 87 2.7 1.6 18 43 383 405 372 409 0.78 10 12 1.7 1.3e+02 2.2 2.1 18 38 411 428 400 437 0.78 11 12 0.2 15 5.2 4.7 16 44 436 461 425 461 0.87 12 12 0.001 0.076 12.5 2.4 15 43 462 487 459 488 0.90
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGAAGGAACCAGATGATGTTTCCCCAATTAAAAAGGAAGATTATAAGATAATTGACAATGCATGCGATGCTAAAAATGACGAATTCTCGAGtttttgtcgagaaaatttaATTTATGGGCTtcgtgaaaatgatgaaaattctggACCTAATAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCAATGGCAGCATATGAAAAATGGTTGCGATTATCagactcaaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTGAATTTGGATGGTGAACTCAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaATAGTCAACGCAAAACCCAAACGGATAAGGCACGCAATCGTACCAAAtatccatgtaatatatgcggtaaaaaatttgcacgaaaaaattatctcaaggtccacatcgattcagtacataatggtgttaaacatgcgtgtggtgTATGTGGGAAGACGTTCACACGAAAAGgaaatctcaaaattcacatcgatgcgatgcataatggtatggcacctacttgcgaagtatgcgggaagaaattctTAACTGAAGCTGCACTcaagattcacatcgatgcacacaatggtgttaaacatccatgtaatatatgcggtcaaaaattttcacgaaaaggTAATCTCAAGGTCCACATCGATGGAGTTCATAATGGTTTTAAGCATGCGTGTGGTctatgtggaaagacattcatacaaaaaagagatctcaagattcacatcgatgcaatTCATAATGGTATTAAACATGAGTGTGGTATATGTGGCAAGACATACGCACAAAAAGgtcatctcaaaattcacatcgatgcgatgcataaaggTATCGCACGTACTTGCGAAatgtgcggaaagaaattctcaaccAAGGCTAAACTCAAGATCCACACcgatggagtacataatggtgttaaacatgcgtgtggtatatgtgaaaagacattcacacgaAAAGGagatctcaaaattcacatcgatgcgatgcataatggtatggcatctacttgcgaagtgtgcggaaagaaatttcaaacgaagaATAAACTCAGGATCCATATCgatgcagtacataatggtgttaaacatgcgtgtagtatatgtgaaaagacattcacactaAAAGGAGATCTCAAGAGGCATATCGAGggacataatggtgttaaacatacGTGTGTTAcgtgtggaaagacattcacactaaagggtaatcttaaaaaacacatgaatTTGATGCATAATAAAACCACTTATTGTAGTAagtgcggcaagacattttctcAAAAGGATCGTCTTATAACTCACATTAAAACGCAGCATGAAGACATTGATCACGCTTAG
- Protein Sequence
- MDFSDVYNSDVRVKKEPDDVSPIKKEDYKIIDNACDAKNDEFSSFCRENLIYGLRENDENSGPNNDLEIEFECKDEKLGINLLVVKKIEDDYPDQWQHMKNGCDYQTQKKIKEEIVDEVKEELNLDGELSDAFDANEKTFAQNSQRKTQTDKARNRTKYPCNICGKKFARKNYLKVHIDSVHNGVKHACGVCGKTFTRKGNLKIHIDAMHNGMAPTCEVCGKKFLTEAALKIHIDAHNGVKHPCNICGQKFSRKGNLKVHIDGVHNGFKHACGLCGKTFIQKRDLKIHIDAIHNGIKHECGICGKTYAQKGHLKIHIDAMHKGIARTCEMCGKKFSTKAKLKIHTDGVHNGVKHACGICEKTFTRKGDLKIHIDAMHNGMASTCEVCGKKFQTKNKLRIHIDAVHNGVKHACSICEKTFTLKGDLKRHIEGHNGVKHTCVTCGKTFTLKGNLKKHMNLMHNKTTYCSKCGKTFSQKDRLITHIKTQHEDIDHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485145;
- 90% Identity
- iTF_01485145;
- 80% Identity
- iTF_01485145;