Tpre002894.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:22902-24774[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.077 5.7 6.5 1.9 19 43 166 187 146 192 0.86 2 12 0.083 6.2 6.4 1.2 19 43 194 215 187 216 0.92 3 12 0.00094 0.07 12.7 1.4 19 44 222 244 217 244 0.93 4 12 0.071 5.3 6.6 0.3 18 43 249 271 245 276 0.81 5 12 0.014 1 8.9 0.7 19 44 278 300 273 300 0.94 6 12 2 1.5e+02 2.0 1.0 19 43 306 327 303 328 0.87 7 12 0.61 46 3.6 2.7 18 30 333 347 328 360 0.75 8 12 0.13 9.4 5.8 1.8 19 43 362 383 359 388 0.74 9 12 0.79 59 3.3 2.1 18 40 389 408 375 412 0.69 10 12 0.33 24 4.5 0.1 19 43 418 439 416 440 0.89 11 12 0.0034 0.26 10.9 1.8 18 44 445 468 443 468 0.94 12 12 0.13 9.5 5.8 0.3 18 44 473 496 471 496 0.91
Sequence Information
- Coding Sequence
- ATGGAACCGAGCAATGTATTAAATCCTACCGTTagagtgaaagatGAGCCTCTTGATGAATCTTgcaatgatgataatgattacaaaatatttgacCCTACACCCGTTACTCAAAATGTTAAATACGAAAGGTTTTGGCGAGAAAATGTAggCCAAATGCTTGGAGAAATTgacaaaaatcatgaaaatgaacttGACGACATCCAAATCGAATTGGAATGTACAGACATGAAGCCCAATTTATTggcgaaaattgaatatttctctCCAAATCACGGACAGTATAGTGATGATTATAAAACTGGAAGCACAATTAAATCAGAAACTGTTGGGACAgtgaagaaagaaatttttagcgaaaaagaaagtgaTTTGAAGTTAGGTTATGGACTCtgcgagaaaaatgaaacaggAAGTGTTTCAAAAGAGATTAACTATAATCATAGGCTAAAAACTCAGACTGAATCAGCCCGTAATGGCAATATCATACCTTCATGTGGTATTTGCGGAAAAGTGTTCAAACGAATAGGTCATCTCAATAGGCACATCAACTTGGTGCATCGTAAAATAagacatgcatgcgatatatgccaaaatACGTTCTCAGAGAAGAAAAGTCTCAGAaatcacatcgattcggtgcattataaaattatgcatcCATGTGATGTATgtcaaaagacattctcaaaCAGGAGTAATCTCAGAAAGCACATCGAGTCGGTGCATAATAGTGTCAGATATGaatgcgatatatgccaaaagacattctcagatAAGGGTTATCTAaaaacccacatcgattcggtgcatcgtAAAATAAGACATGCATGCGACATATGCCAAAATACGTTCTCAGAGAAGAAAAGTCTCAGAaatcacatcgattcgatgcacaatggtgtcaaatATCCGTGCGATAAATGCCCAAAGAAATTCTCACACAAGAGTTATCTCAAAACCCACGTCGAATCGATAcatcataaaattacgtaTTCTTGCAATAAATGTCAAAAGACATTTTCAGAAAAGGGTTATGTCAAAACTCAcgtcgattcggtgcataatggtgtcagaCATGCATGCGGTAtttgccaaaagacattctcaaaTAAGGGTTatctaaaaaaacacattgattCGATTCATAATAGTGTCagacatgcatgcgatatttgtgaaaagacattcacaacAAAGAATTATCTCCAAAACCATATCGACGCTGTGCACAATGGAATTGGCTTCGCATGTGATATGTGCACAAAGAAATTTACTGCGAAAAGTAGTCTGAAAGCCCATATCGATGCTGAGCACAATGGAATCACCCACACATGTGATTtctgtggaaaaaaatttaaatatcagACTCAACTCCGTAAGCATGTCAAATCCTCACATAGTGGTATCGTATATTCATGCGAGAcatgcggcaagacatttgGACAGAAAAGAAATCTCAGAGCTCACATCGATATGGCGCATCGCTCACGCAATCAGAcctaa
- Protein Sequence
- MEPSNVLNPTVRVKDEPLDESCNDDNDYKIFDPTPVTQNVKYERFWRENVGQMLGEIDKNHENELDDIQIELECTDMKPNLLAKIEYFSPNHGQYSDDYKTGSTIKSETVGTVKKEIFSEKESDLKLGYGLCEKNETGSVSKEINYNHRLKTQTESARNGNIIPSCGICGKVFKRIGHLNRHINLVHRKIRHACDICQNTFSEKKSLRNHIDSVHYKIMHPCDVCQKTFSNRSNLRKHIESVHNSVRYECDICQKTFSDKGYLKTHIDSVHRKIRHACDICQNTFSEKKSLRNHIDSMHNGVKYPCDKCPKKFSHKSYLKTHVESIHHKITYSCNKCQKTFSEKGYVKTHVDSVHNGVRHACGICQKTFSNKGYLKKHIDSIHNSVRHACDICEKTFTTKNYLQNHIDAVHNGIGFACDMCTKKFTAKSSLKAHIDAEHNGITHTCDFCGKKFKYQTQLRKHVKSSHSGIVYSCETCGKTFGQKRNLRAHIDMAHRSRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485173;
- 90% Identity
- iTF_01485173;
- 80% Identity
- iTF_01485173;