Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.051 3.8 7.1 2.2 3 43 149 185 147 186 0.77

2 7 0.13 9.8 5.8 1.9 19 34 192 204 187 218 0.77

3 7 0.15 12 5.6 4.9 18 44 219 242 208 242 0.86

4 7 5.9e-05 0.0044 16.5 1.2 18 44 247 270 244 270 0.94

5 7 0.15 11 5.6 0.2 19 29 276 286 273 298 0.84

6 7 0.087 6.5 6.4 0.6 19 43 304 325 292 326 0.86

7 7 0.0044 0.33 10.5 2.2 13 43 326 353 322 353 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.051	3.8	7.1	2.2	3	43	149	185	147	186	0.77
2	7	0.13	9.8	5.8	1.9	19	34	192	204	187	218	0.77
3	7	0.15	12	5.6	4.9	18	44	219	242	208	242	0.86
4	7	5.9e-05	0.0044	16.5	1.2	18	44	247	270	244	270	0.94
5	7	0.15	11	5.6	0.2	19	29	276	286	273	298	0.84
6	7	0.087	6.5	6.4	0.6	19	43	304	325	292	326	0.86
7	7	0.0044	0.33	10.5	2.2	13	43	326	353	322	353	0.85

Coding Sequence: ATGAGATTTCCCACGAGTAATATGGAATCTGGTGATTTATTCAATCCTGATATTAgagtgaaagaagAGCCTCGGCATGAACTTCACgatcattataattatgaaataattgacACGACACTTACCGTTACTCAAAATGTTAAATACGAAAAGTTTCAGCATGAAAATTCAgacCACATGCTGCAAGAATATGACGAAAGTCATAAAAATGGACATAACGACATCCAAATCGAATTGGAATGTATGGACATGAAGCCTAATTTAGCAgttaaaattgaagatttctCTCTAAATCACTGGCAGGATAGTGACGAGTATAAAACTGggagcaaaattaaattagaacCCGTCGGGacagtgaaaaaagaaatttttagtGAAGAAGCCACTGTGATTAATGTTGAAtgtgtttcaaaaaataatggaaGCACTCCTGCAAGTCATCTAAAAAGACACGTCGATGCAGTCTGCAAAGATGTCACGCACGCATGTGAAATATGCGGCAATGTATTCAAACGAAGAGTTGATCTCAATAggcacatcgattcggtgcataatggtgttagacatgcttgtgatatttgtggaaagacatttactCGAAAAGatcatctcaaaatccacgtCGAGTCGATACATCATAAAATCAAGCATCCTTGTAAtaaatgccaaaagacattctcaaaAAAACGTGATCTCAATAGGCACATAGAGTCGGTGCATAATGGAATTTCACATACGTGCAATATATGCCcaaagacattctcagacaagagtaatctcagaaaacacatcgattcggtgcacaagCGAGTCAGACATGCATGTGAcatttgtggaaagacattctcacAAAAAGttcatctcaaaatccacaccGACGCAGTGCACAATAGAATCACCCAAGcatgtgatttttgtgaaaaaaaatttagatatcAAACTCAACTCAATACGCATGTCAAATCGTCGCATAATGACAACACTTATAAATGCAAGATATGCGGAAAAACGTTCGGACAGAAACGAAATCTGAAAGCTCATATCGATGTGGCTCATTGA
Protein Sequence: MRFPTSNMESGDLFNPDIRVKEEPRHELHDHYNYEIIDTTLTVTQNVKYEKFQHENSDHMLQEYDESHKNGHNDIQIELECMDMKPNLAVKIEDFSLNHWQDSDEYKTGSKIKLEPVGTVKKEIFSEEATVINVECVSKNNGSTPASHLKRHVDAVCKDVTHACEICGNVFKRRVDLNRHIDSVHNGVRHACDICGKTFTRKDHLKIHVESIHHKIKHPCNKCQKTFSKKRDLNRHIESVHNGISHTCNICPKTFSDKSNLRKHIDSVHKRVRHACDICGKTFSQKVHLKIHTDAVHNRITQACDFCEKKFRYQTQLNTHVKSSHNDNTYKCKICGKTFGQKRNLKAHIDVAH

Sequence clustering based on sequence similarity using MMseqs2