Tpre010358.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:74829-76596[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.025 1.9 8.1 1.6 18 43 159 181 153 182 0.89 2 9 0.081 6 6.5 0.8 19 43 188 209 185 210 0.81 3 9 0.011 0.84 9.2 0.4 18 44 215 238 212 238 0.90 4 9 0.082 6.1 6.4 1.0 18 43 243 265 242 266 0.85 5 9 0.00034 0.025 14.1 0.2 18 43 271 293 269 294 0.95 6 9 0.12 8.8 5.9 0.6 18 43 299 321 297 322 0.77 7 9 0.0036 0.27 10.8 3.2 18 44 327 350 324 350 0.93 8 9 1.2 92 2.7 0.4 19 44 356 378 353 380 0.85 9 9 0.055 4.1 7.0 1.3 18 38 383 400 379 406 0.88
Sequence Information
- Coding Sequence
- ATGGATCCCAGTAGTACATTTGATTCTGCTATcagaataaaaaaggaacCCATCGATACATCGCTCATTGAATATGATGACAATGTGATTGACAAGCCTCCcgatgttgaaaattttcatttctcaagACTTCAGCGAGGATATTCGACGCTTCAAGAATGTAacgaaaatcataataatggACTTGACGAAATCAAAGTTGAAATCGAATGTAGGGACGTGAAGCccgaatttaatttattagcAGTTACCAAAATTGAGGATTGTACTCAACATCGATTGCAGCACATGATATATAGCGACGACAACACCAGTCAAAACATCATAAAAATAGAAACTgtgagtaaaataaaagaagaaatcaATTCGAATTTCGAAATTGAACTCGacgagagaaacaaaaagagCAAAAAGCTCAACAACATCGATAGAGTCAAAACCAACATTGGTATGATGCATAGTGGGGCAGTCCATATATGCAAAACATGCGGAAAGACGTTTAAAAACAAGTTCAATCTGGATAGGCACGTTAAATCAATTCATGATGGTGTTACATATGCATGCAACACGTGTGGAAAGTCATTCACTCGAAAAATttatctcaaaactcacatagaTTCGGTGCATAACGGTGTCACTCATGAATGcgatatttgtggaaagatattttcacaaaaaagttatctcaaaatccacatcgattcggtgcacaacGGTGTCACTcctgaatgtgaaatttgcggaaagaaattctcatGTAAGAGTTATCTTAAAGTCCACATCGATATGATGCACAATGGTGTCGCACCTACTTGTGATACATgcagaaagaaattttcaacgaaaagcAATCTCAAACAACATATCGATTCGGCGCACTACTGTGTCACtcatgaatgtgatatttgtggaaagaaattcacACAGAAGggttatctcaaaatccacatcgattcggcgCACAACGGTGTCACTcacgaatgtgatatttgtggaaagataTTTTCACATAAAGGTAATCTCAAACATCACATAAATGCGGTGCATAATGGAATCATACACGCATGCGACAGATGTGATAAGACTTTTAAACGTAAGGATAAGCTGAAgatccacatcgattcggttcATCAATGTTCGACTCACACTTGTGGAGTATGCGGAAAAAATttcggacgaaaaaaaaatctcattgcCCACAAGGATATGGCACATCGTTCTCGTGCAACTACccaataa
- Protein Sequence
- MDPSSTFDSAIRIKKEPIDTSLIEYDDNVIDKPPDVENFHFSRLQRGYSTLQECNENHNNGLDEIKVEIECRDVKPEFNLLAVTKIEDCTQHRLQHMIYSDDNTSQNIIKIETVSKIKEEINSNFEIELDERNKKSKKLNNIDRVKTNIGMMHSGAVHICKTCGKTFKNKFNLDRHVKSIHDGVTYACNTCGKSFTRKIYLKTHIDSVHNGVTHECDICGKIFSQKSYLKIHIDSVHNGVTPECEICGKKFSCKSYLKVHIDMMHNGVAPTCDTCRKKFSTKSNLKQHIDSAHYCVTHECDICGKKFTQKGYLKIHIDSAHNGVTHECDICGKIFSHKGNLKHHINAVHNGIIHACDRCDKTFKRKDKLKIHIDSVHQCSTHTCGVCGKNFGRKKNLIAHKDMAHRSRATTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485273;
- 90% Identity
- iTF_01485273;
- 80% Identity
- iTF_01485273;