Tpre011892.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:341352-343853[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.028 2.1 7.9 1.1 12 44 149 178 144 178 0.87 2 9 0.0072 0.53 9.8 0.4 19 43 212 233 199 235 0.85 3 9 0.021 1.6 8.3 1.4 19 39 240 257 230 262 0.79 4 9 0.49 36 4.0 1.5 19 41 268 287 262 295 0.83 5 9 0.00055 0.041 13.4 4.1 3 44 281 318 279 318 0.80 6 9 0.2 15 5.2 0.2 19 43 324 345 321 346 0.73 7 9 1.9 1.4e+02 2.1 0.2 19 29 352 362 349 374 0.77 8 9 0.02 1.5 8.4 2.1 18 43 379 401 367 402 0.84 9 9 0.0015 0.11 12.0 3.1 14 44 401 428 396 429 0.91
Sequence Information
- Coding Sequence
- ATGGAATCCAACGGTACCGTCCACTACGCAGCCAAAGTAAAGGAAGAGCCCGAGGATATGTCGCTTCACGAGGATGATGATTATCGAATGGATGACGATACTTTTGATACCAAAAGTTTTCAAGACGAATCGACTCGTATGTTTAAAAGAAGCCAAGAAACTCACGAAATTCAATCGAACCCCGAGATTGAGATTGAGATTGAATGCGTGGATGTAAAACCGATTCTAAATTTATCAGTACCTAAACGGTTAGATAATTGGACGAAAAATCACTTGCTGGATATTCAAAATGGTAGTGATTTTGAAGCTAAatccaaaataaaaatagaaccCGAGGATGCTGTGAAAGAAGAATTTTCATATGATGATATTGATAAAGATATAAGTAATGATTGCGAAATCAACggacaaaatataaaaattgatcctCAAGAATCAGCAAAAATCAGTGAAAAGTCTATAAAGTGTGACAAGTGTTTGAAGAAATTTCCCAACAAAAGAAGTCTTAAAATTCACATGAATTCAGTGCACAGTAATAATCTCTATCCATCTCAAGcgtgtgaaaagacattcggACAAAAGAATATCTCGAATGTCCATACCGATTCgatgcataataaaataactcatGCATGTGAAATATGCGGAAATGTGTTCAAACGAAGATCTGATCTCATTAGACATATCGATGCGATACATCGTAAAATCACTTAcccatgtgatatttgcggaaagacataCTCATACAAGAgtcatctcaaaatccacatcgatgcgctgcataatggtgtcacatattcgtgtgatatttgcgggaAGACATTCGCACTGAAGAtcaatctcaaaaaacacgtCGAAATGATACATCATAAAATCAAACATGCATGTGaaatatgccaaaagacattctcagacaagagcaatctcaaaaaacacatcgattcggtgcataatggtgtcacatattcttgtgatatttgcgggaAGATATACGCAGTAAAGATCAGTCTCAGAATCCACATCGACtcagtgcataatggtatttCTTACggatgtgacaaatgcgaaaagactTTTACGCAGAAGggttatctcaaaatccatatcgattcggtgcattataaaatcaagcatgcatgtgatatttgtggaaagacattctcacAAAAGGTAAATCTCAAAACCCATACCAACtcggtgcataataaaaatacttgtgacaaatgcggaaaaaaattcgtaaaaaaaagcaaacttATTGCTCACATCGACACAGTACACAATCATGTCAAGCCTCACCAGTGTTAA
- Protein Sequence
- MESNGTVHYAAKVKEEPEDMSLHEDDDYRMDDDTFDTKSFQDESTRMFKRSQETHEIQSNPEIEIEIECVDVKPILNLSVPKRLDNWTKNHLLDIQNGSDFEAKSKIKIEPEDAVKEEFSYDDIDKDISNDCEINGQNIKIDPQESAKISEKSIKCDKCLKKFPNKRSLKIHMNSVHSNNLYPSQACEKTFGQKNISNVHTDSMHNKITHACEICGNVFKRRSDLIRHIDAIHRKITYPCDICGKTYSYKSHLKIHIDALHNGVTYSCDICGKTFALKINLKKHVEMIHHKIKHACEICQKTFSDKSNLKKHIDSVHNGVTYSCDICGKIYAVKISLRIHIDSVHNGISYGCDKCEKTFTQKGYLKIHIDSVHYKIKHACDICGKTFSQKVNLKTHTNSVHNKNTCDKCGKKFVKKSKLIAHIDTVHNHVKPHQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485256;
- 90% Identity
- iTF_01485256;
- 80% Identity
- iTF_01485256;