Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.002 0.15 11.6 0.2 4 44 160 196 157 196 0.83

2 6 0.015 1.1 8.8 0.8 18 43 201 223 197 229 0.82

3 6 0.0015 0.11 12.0 1.7 19 44 230 266 225 266 0.91

4 6 0.14 11 5.7 0.3 19 29 272 282 267 293 0.84

5 6 0.0075 0.56 9.8 1.2 19 44 300 322 284 322 0.89

6 6 0.0058 0.43 10.1 0.5 18 43 327 349 324 349 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.002	0.15	11.6	0.2	4	44	160	196	157	196	0.83
2	6	0.015	1.1	8.8	0.8	18	43	201	223	197	229	0.82
3	6	0.0015	0.11	12.0	1.7	19	44	230	266	225	266	0.91
4	6	0.14	11	5.7	0.3	19	29	272	282	267	293	0.84
5	6	0.0075	0.56	9.8	1.2	19	44	300	322	284	322	0.89
6	6	0.0058	0.43	10.1	0.5	18	43	327	349	324	349	0.90

Coding Sequence: ATGATATTTCCAACGAGTAAGATGGAATCTGGTAATTTATTCAATCCTGATATTAgAGTTAAAGAAGAGCCTCGGCATGAACTTCacgatgatgataattatgaaataattgacACGACCCTTGCAGTTACTCAAAATGTTAAATGCGAAAGGTTTCGATATGAGAATTCAACCCAAAAGCTTCTTCAAAATTATGACGAAAATCACGAAAATGAACGTGATAACATCCAAATCGAATTGGAATGTATAGACATGAAGCCCAACTTATTGGCGGTtgcaaaaattgaagattattCTCCAAATCAATGGCCGAATAGTGACGAGTATAAAACTggaagcaaaattaaattagaaacTGTTGGGGTGctgaagaaagaaattttaagcGAAGAAGCCACTGAATTGAATTTTGGACGTGGactgaacgaaaaaaatgagaaagaatGTGTTGAAAAGTCAAACTGTAAGAAGAGTCTCAAAGCACACGTGGGTATAGTGCAAAGTGGTATCAACAatacatgcgatatatgccaaaagacattctcaaaAAAACCTGATCTCAATAGGCACATAGAGTCGGTGCATAATGGAATTTCACATACGTGCAATATATGTCCAAAGACATACTCGGACAAAAGGagtctcaaaaaacacatcgattgggtgcataatggtgttagaCATGCATGTTACATTTGTGAAAAGATATTCTCACGAAAAGATTATCTTAGAACCCACACTGAATcgacattctcagacaAGAGTAATCTCAGAAGGCACACCGATTCGGTGCACAAGCGAGTCAGACATGCATGTGAcatttgtggaaagacattctcacAAAAAGttcatctcaaaatccacaccGACATAGTCCACAATAGAATCACCCAAGcatgtgatttttgtgaaaaaaaatttaaatatcaaacTCAACTCAATAGGCATGTCAAATCGTCGCATAATGACATCACTTATAAATGCAAGATATGCGGAAAAACGTTCGGACAGAAACGAAATCTGAAAGCTCATATCGATGTGGCTCATTGA
Protein Sequence: MIFPTSKMESGNLFNPDIRVKEEPRHELHDDDNYEIIDTTLAVTQNVKCERFRYENSTQKLLQNYDENHENERDNIQIELECIDMKPNLLAVAKIEDYSPNQWPNSDEYKTGSKIKLETVGVLKKEILSEEATELNFGRGLNEKNEKECVEKSNCKKSLKAHVGIVQSGINNTCDICQKTFSKKPDLNRHIESVHNGISHTCNICPKTYSDKRSLKKHIDWVHNGVRHACYICEKIFSRKDYLRTHTESTFSDKSNLRRHTDSVHKRVRHACDICGKTFSQKVHLKIHTDIVHNRITQACDFCEKKFKYQTQLNRHVKSSHNDITYKCKICGKTFGQKRNLKAHIDVAH

Sequence clustering based on sequence similarity using MMseqs2