Tpre008346.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:441450-442755[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00074 0.055 13.0 1.2 6 44 155 189 151 189 0.83 2 6 8e-05 0.006 16.1 0.4 18 44 194 217 192 217 0.93 3 6 0.01 0.77 9.3 0.1 19 44 223 245 219 245 0.89 4 6 0.15 11 5.6 0.1 19 43 251 272 248 273 0.87 5 6 0.0021 0.15 11.6 0.4 16 44 276 301 273 301 0.93 6 6 0.29 21 4.7 0.7 18 43 327 349 313 350 0.86
Sequence Information
- Coding Sequence
- ATGGAATCCATTGACCATTGTAtcaaagtgaaagaggaGCCTTGTGATGCACCACTCATTGAAAATGATGGTGAAATGATTGACGAGAAACCCGATCTTAAGAACATCCAACTCTTACCACATCTGccagaaaattcaATGCCTACCGCTCGGAAATGTGAAGGAAATCATGATATTGTACGCgatgataaattgaaaatagtttttgaatgCCAAGACGTCAAGCCCAACATTAATTTATCATCAGTTCagaaaattgaagatgatTCGCGAGATATCGAATATAGTGATGGTTGTAAAactcaaaacaaaattaatatagatcctgcagtagtagtaaaaCAAGAAATCGTGGGTGATGCTGCAGAAGGatcgaatttgaatttcgacCCTATAATTgtcgaacaaaataaaaaaagaagaattacaaaaaaacttaacGAAGATCATGATCTCAAAAAATACATGGGTGCGATGCATAGCAATACAACCCTAGCATGTGAAATATGTGCaaagaaatattcaaataagtataatcttaaaatccacatcgaGTCGGTGCATAGTGGAATCACTTACGTatgtgatatatgccaaaagacattctcaagTAATAGTAatctcaagaaacacatcgattcagtacacAATAGAGCCACATATGCATGTGATGTATGTGGTAAGTCATTCTCACAAAAAGGTAGTCTTAAAAGACACATCGATACCGCACACAATGGCGTTAgatatgcatgtgatatttgcggcaaatcatttactcaaaaatttgGTCTCAAAAAACACGTCGATGGAAAACATAATGGTGTCAAACTTGAATGTGATGTTTGCAGAAAGTCATTTTCACTTAAAACtaatctcaaaacccacatcgattcggtgcacaatggGGTCACATGTGTATGTGATGTATGCGGAAAATTCCAAATCCACATCGAATCGACGCACAATGGTGTTACATACGAATGTGATAGATGTGGGAAGAAGTTTAAAGAAAAGGCTAATCTAAAACTTCATATTGACTGGATGCACAACGGTGTTAATGCATTCAAAACGTGTGGCAAGAGGGGAATTCGCAAacaaaagtaa
- Protein Sequence
- MESIDHCIKVKEEPCDAPLIENDGEMIDEKPDLKNIQLLPHLPENSMPTARKCEGNHDIVRDDKLKIVFECQDVKPNINLSSVQKIEDDSRDIEYSDGCKTQNKINIDPAVVVKQEIVGDAAEGSNLNFDPIIVEQNKKRRITKKLNEDHDLKKYMGAMHSNTTLACEICAKKYSNKYNLKIHIESVHSGITYVCDICQKTFSSNSNLKKHIDSVHNRATYACDVCGKSFSQKGSLKRHIDTAHNGVRYACDICGKSFTQKFGLKKHVDGKHNGVKLECDVCRKSFSLKTNLKTHIDSVHNGVTCVCDVCGKFQIHIESTHNGVTYECDRCGKKFKEKANLKLHIDWMHNGVNAFKTCGKRGIRKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485469;
- 90% Identity
- iTF_01485469;
- 80% Identity
- iTF_01485469;