Tpre008325.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:411640-421390[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00099 0.074 12.6 1.4 11 44 175 204 166 204 0.83 2 8 0.0011 0.084 12.4 0.5 18 44 209 232 207 232 0.94 3 8 0.015 1.1 8.8 0.1 19 44 238 260 235 260 0.87 4 8 0.15 11 5.6 0.5 19 43 266 287 263 288 0.88 5 8 0.0022 0.16 11.5 0.2 16 44 291 316 289 316 0.93 6 8 0.025 1.8 8.1 2.5 18 43 321 343 318 344 0.91 7 8 0.11 8.4 6.0 1.5 19 44 350 372 347 372 0.91 8 8 0.23 17 5.0 0.2 17 43 376 399 373 400 0.87
Sequence Information
- Coding Sequence
- atgGGGAAGGAAGGAAAAGTAGAAGCTGCCCCCGCGACCGACGTCGGTGTGCTCTCTAGCCCTTATCTCCGagtgaaagaggaGCCTTGTGATGCAccaatcattgaaaataataatgaaatgattGACGAGAAGCCCGATCTTAAGAACATCCAACTCTTACCACGTCTGccagaaaattcaATGCCTAACGCTCGGAAATGTGAAGGAAATCATGATATTGTACGCgatgataaattgaaaatagtttttgaatgCCAAGACGTCAAGCCCAACATTAATTTATCAGCAGTTCagaaaattgaagatgatTCGCGAGATATCGAATATAGTGATGGTTGTAAaactaaaaacaaaattaaaatagagcCTGCAGTGGTagtaaaacaagaaatcaTGGATGATGCTGCAGATAGatcgaatttgaatttcaaccCTATAATTGTcgaacaaaatataaaaagaagaattacaaaaaatcttAACGAAGATCATGACCTCAAAAAACACAAGGGTGCGGTGCATAGCGATACAACCCTAGCATGTGAAATATGTGCaaagaaatattcaaataagtataatcttaaaatccacatcgaGTCGGTGCATAGTGGAATCACTTACGAatgtgatatatgccaaaaggCATCCTCAAGtaagagtaatctcaaaaaacacatcgattcagtacacAATAGAGTCACATATGCATGTGATTTATGCGGAAAGAAGTTCTCAGAGAATGGTagtcttaaaaaacacatcgatacCGCACACAATGGTGTtagacatgcatgtgatatttgcggcaaATCATTTACTCAAAAAGTTGGTCTCAAAAAACACGTCGATGGAAAACATAATGGTGTCAAACTTGAATGTGATGTTTGCAGAAAGTCATTTTCACTTAAAACtaatctcaaaacccacatcgattcCGTGCACAATCGGGTCACATGTGTATGTGATGTATGCGGAAAGATATTTACAAGAAAAGATCATCTTAAAACCCACATCGAGTCAGTGCATCATAAAATCACGCATGCTTGTGATTTATGTCAAAAAAGATACTCAGACAAGCGTAATCTCAGAAAACACGTCGATTGGAAACATAATGGTGTCAAACATGAGTGTGATTTATGCGGGGAAAAATTCACAACGAAATCTTATCTCAAAGATCACATTGATTCGCTACATAATGATCACACTTACATGTGA
- Protein Sequence
- MGKEGKVEAAPATDVGVLSSPYLRVKEEPCDAPIIENNNEMIDEKPDLKNIQLLPRLPENSMPNARKCEGNHDIVRDDKLKIVFECQDVKPNINLSAVQKIEDDSRDIEYSDGCKTKNKIKIEPAVVVKQEIMDDAADRSNLNFNPIIVEQNIKRRITKNLNEDHDLKKHKGAVHSDTTLACEICAKKYSNKYNLKIHIESVHSGITYECDICQKASSSKSNLKKHIDSVHNRVTYACDLCGKKFSENGSLKKHIDTAHNGVRHACDICGKSFTQKVGLKKHVDGKHNGVKLECDVCRKSFSLKTNLKTHIDSVHNRVTCVCDVCGKIFTRKDHLKTHIESVHHKITHACDLCQKRYSDKRNLRKHVDWKHNGVKHECDLCGEKFTTKSYLKDHIDSLHNDHTYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485469;
- 90% Identity
- iTF_01485410;
- 80% Identity
- iTF_01485410;