Tpre003722.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1977959-1980362[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00094 0.07 12.6 2.2 3 44 159 196 157 196 0.86 2 13 0.023 1.7 8.2 0.5 18 43 201 223 198 224 0.89 3 13 0.011 0.8 9.3 2.1 19 44 230 252 226 252 0.92 4 13 0.19 14 5.3 1.2 19 30 258 269 255 280 0.82 5 13 0.0069 0.51 9.9 0.4 19 44 286 308 279 308 0.92 6 13 0.017 1.3 8.6 1.2 18 43 313 335 310 336 0.86 7 13 0.00058 0.043 13.3 2.3 19 44 342 364 337 364 0.92 8 13 0.056 4.2 7.0 1.6 18 44 369 392 367 392 0.90 9 13 0.068 5.1 6.7 1.5 18 44 397 420 395 420 0.90 10 13 0.018 1.3 8.6 1.3 19 44 426 448 423 448 0.94 11 13 7.7 5.7e+02 0.1 0.3 18 43 453 475 450 476 0.81 12 13 0.002 0.15 11.6 5.1 19 44 482 504 478 504 0.95 13 13 7.1 5.3e+02 0.2 0.3 21 29 512 520 511 531 0.78
Sequence Information
- Coding Sequence
- ATGGAATTGAGTGATGCGCTTAATTGTGgtgtcagagtgaaagatGAACATAGTGATATGTCGCTGATCGAGGATAATTCGGACGTAACTGATGAGAAACCAGATCTCAAAAACTTCCAACTCTTGCCAttacttaaacaaaaatcaACCCACACGCTTCGAAATTGtgacaaaaattatgaaagcGATCTTGatgacaaaatgaaaatagtttttgaatgtCAAGATGTGAAGCCCaacattaatttatcaaaagttaaaaaatctgacaatgattttcaaaatcacttGCGGAATGTCAAAGATATCGATGGTAATACAACTCAAGacaactttaaaataaaacccGTGGGTGAAGTTAAACAAGAATTTGTTAATAATGTGGAGGAAGAATCAAATTTGAAGTTCGACCGTAAATTTGTTGAACAgaataaaaagagaagaattacaaaaaaaccCAAGAAAGatcataacctcaaaaaacACACCAATCCGGCTCATCGCGATACCTTGCCTACTTGTGGTATATGCGGAAAGAAGAGCACAACAAAgggtaatctcaaaaaacacatcgactCGATGCACAGTGGTATCAAACATGAGTGTGATGTATGTggcaagacattttcattaaaaaataatcttaaagtCCACATTGAtgcagtgcataatggtatcaagTATCCATGTGCTATTTGTgggaaacatttttcaacaaagaaTTATCTAAAAAGACACATAAATTCGGtgcacaataaaataattcatgcaTGCGAtacatgcggaaagaaatACTCACGCAAGGGTGATCTCAAGAAACACACCGACGTggcgcacaatggtgtcacttttgcatgtgatatttgcagaaaaaaatatgcatattATTCCAGTCTTAAATACCACATTGATAcggtacataataaaattattcatgaatgtgatatttgcggaaagaagtACTCAAAGAAGAGGGATCTCAAGATACACATCGTTACGGTGCATAATGATGTtagacatgcatgtgatatttgcggaaaaaaatactcccAGAAGAGGTGTCTCAAGAGACACATCGATGTggcgcacaatggtgtcacacATACTTGTGatatatgcaaaaagaaattctccACCAGAGGTAATctaaaaattcacatcgattcggtgcacaacGGTGTCACACATATTTGTGatatatgcaaaaagaaattctccACTCGCGGTAATctaaaaattcacatcgattcggtgcacaagggtgtcagacatgcatgcgatatttgtggcacgacattttcacaaaagagTAAACTCAAAAACCACATTGAATCAGTCCATAATAATGTCAAACATGCATGCGACATATGTGAATTGAAATTCACCTTTAAGCGTAATCTCAAAGTTCACATCGATGCAGATCACAATGGTATCAGCCATGCATGCAATGTGTgcaaaaaaacgtttaaacATAAGAATAATCTGACTAGGCACGTTCAATCAGCGCATAATCGTGTCAGACATTCacgtgatatttgcggaaaaaaatatacaataaagtGTAAACATAAAGCCCCCGTTAATTCAGTGCATCACTCACTCATTTCAACTTGA
- Protein Sequence
- MELSDALNCGVRVKDEHSDMSLIEDNSDVTDEKPDLKNFQLLPLLKQKSTHTLRNCDKNYESDLDDKMKIVFECQDVKPNINLSKVKKSDNDFQNHLRNVKDIDGNTTQDNFKIKPVGEVKQEFVNNVEEESNLKFDRKFVEQNKKRRITKKPKKDHNLKKHTNPAHRDTLPTCGICGKKSTTKGNLKKHIDSMHSGIKHECDVCGKTFSLKNNLKVHIDAVHNGIKYPCAICGKHFSTKNYLKRHINSVHNKIIHACDTCGKKYSRKGDLKKHTDVAHNGVTFACDICRKKYAYYSSLKYHIDTVHNKIIHECDICGKKYSKKRDLKIHIVTVHNDVRHACDICGKKYSQKRCLKRHIDVAHNGVTHTCDICKKKFSTRGNLKIHIDSVHNGVTHICDICKKKFSTRGNLKIHIDSVHKGVRHACDICGTTFSQKSKLKNHIESVHNNVKHACDICELKFTFKRNLKVHIDADHNGISHACNVCKKTFKHKNNLTRHVQSAHNRVRHSRDICGKKYTIKCKHKAPVNSVHHSLIST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485201;
- 90% Identity
- iTF_01485201;
- 80% Identity
- iTF_01485201;