Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.1 7.7 6.1 1.1 14 44 101 128 82 128 0.86

2 9 0.00068 0.051 13.1 1.1 19 43 134 155 132 156 0.94

3 9 0.0088 0.66 9.5 1.8 17 44 160 184 158 184 0.92

4 9 0.0031 0.23 11.0 0.6 18 44 189 212 188 212 0.95

5 9 0.0045 0.34 10.5 1.0 18 44 217 240 215 240 0.95

6 9 0.096 7.2 6.2 0.6 18 29 245 256 243 268 0.81

7 9 0.035 2.6 7.6 3.5 17 44 272 296 259 296 0.83

8 9 3.4 2.5e+02 1.3 5.4 15 30 298 315 287 324 0.71

9 9 0.00023 0.017 14.6 0.7 18 44 329 352 326 352 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.1	7.7	6.1	1.1	14	44	101	128	82	128	0.86
2	9	0.00068	0.051	13.1	1.1	19	43	134	155	132	156	0.94
3	9	0.0088	0.66	9.5	1.8	17	44	160	184	158	184	0.92
4	9	0.0031	0.23	11.0	0.6	18	44	189	212	188	212	0.95
5	9	0.0045	0.34	10.5	1.0	18	44	217	240	215	240	0.95
6	9	0.096	7.2	6.2	0.6	18	29	245	256	243	268	0.81
7	9	0.035	2.6	7.6	3.5	17	44	272	296	259	296	0.83
8	9	3.4	2.5e+02	1.3	5.4	15	30	298	315	287	324	0.71
9	9	0.00023	0.017	14.6	0.7	18	44	329	352	326	352	0.95

Coding Sequence: ATGGAAATTGTTTTTGAATGTGAAGACGTCAAGCCCAAAATTGATTCATTCAtcgttaaaaaagttgaaaattactCTCCAAATCATTTGCATAATGAAAAAGGTGACAACGTTTATAAAGGccaaaacattattaaaatggAACCTACGGACGAAGTAAAACAAGAATTTTTGAGTGACAACGCAgaacaattaaaattgaattcagaCTGTAAAGTTCAACAAAAGACAAAAAGgaatattaagaaaaaatttaacaaaaaacttaacctcaaaacacacaTTGGTGCTGGGCATACTGATACAACCCGCTCATGCGATACATGCGGCAAAACATTTTCACAACGATGGACTCTTAAAGTCCACATTAATTCAGTACATAGGGGTATCACACAGgcgtgtgatatttgcggcaagaaattttcacgaaaaagtcatcttaaaaaacacattgatTCAGTGCATTATGGCATAAAACATACATGTCTTAAATGCGGCAACACATTTTCACAGCAGTATAATCTTAAAACCCAcattgattcagtgcataatggtatcacaCCTACATGTGACGTTtgtggaaagtcattttcaTACAAGTGTAAcctaaaaaaacacattgattcagtgcataatggtatcatACCTACATGTGACGTTTGTGGAAAGTCGTTTTCACACAAgtataacttaaaaaaacacattaattcagtgcataatggcatcacacatacatgtgacatttgtagaaagacattttcatacaaatatgATCTTAAAGCTCACACGGATACAATACACATTGGTATGGCACTTgtgtgtgatatttgcggcaaGAAATGTTCACGAAAAggttatctcaaaaaacacattgattcagtgcataatggtgtaAAACATACATGTCTTAAATGCGGCAAGGCATTTTCGCAGCAGTGTCATCTCAAAACCCACActgattcagtgcataatggtatcacaCCTACATGTGACgtttgtggaaagacattttcataCAAGTGTAACCTAAAAAGACAcattgattcagtgcataatggtatcaaaAAGTCATAA
Protein Sequence: MEIVFECEDVKPKIDSFIVKKVENYSPNHLHNEKGDNVYKGQNIIKMEPTDEVKQEFLSDNAEQLKLNSDCKVQQKTKRNIKKKFNKKLNLKTHIGAGHTDTTRSCDTCGKTFSQRWTLKVHINSVHRGITQACDICGKKFSRKSHLKKHIDSVHYGIKHTCLKCGNTFSQQYNLKTHIDSVHNGITPTCDVCGKSFSYKCNLKKHIDSVHNGIIPTCDVCGKSFSHKYNLKKHINSVHNGITHTCDICRKTFSYKYDLKAHTDTIHIGMALVCDICGKKCSRKGYLKKHIDSVHNGVKHTCLKCGKAFSQQCHLKTHTDSVHNGITPTCDVCGKTFSYKCNLKRHIDSVHNGIKKS

Sequence clustering based on sequence similarity using MMseqs2