Tpre011871.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:334118-336379[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00037 0.027 14.0 2.0 16 43 171 195 158 196 0.86 2 13 0.097 7.2 6.2 6.2 19 44 202 224 198 224 0.94 3 13 0.0075 0.56 9.8 1.7 18 44 229 252 227 252 0.91 4 13 0.017 1.3 8.6 1.0 18 43 257 279 253 280 0.91 5 13 0.0055 0.41 10.2 0.3 19 44 286 308 283 308 0.93 6 13 0.61 46 3.7 0.3 19 29 314 324 311 339 0.80 7 13 0.087 6.5 6.4 0.4 19 43 342 363 338 364 0.89 8 13 0.2 15 5.2 3.0 19 44 370 392 367 392 0.88 9 13 0.3 22 4.7 0.8 19 43 398 419 395 425 0.82 10 13 0.0036 0.27 10.8 0.2 19 44 426 448 421 448 0.94 11 13 0.25 18 4.9 0.8 18 43 453 475 450 476 0.83 12 13 0.00077 0.057 12.9 0.4 18 44 481 504 477 504 0.93 13 13 2.7 2e+02 1.6 0.6 19 32 510 523 507 532 0.77
Sequence Information
- Coding Sequence
- ATGAGATTTACCACAAGTAAGATGGAATCTGGTGATTTATTCAATCCTGATATTAgagtgaaagaagAGGCTCGTGATGACCCTCTCAATGATGATGAcggttataaaataattgacacGACACTTGCAGTTCCTCAAAATGTTAAATACGAGAGGTCTTGGcatgaaaattcaACCCAAGGGCTTCAAGAATATGGTGAAAATCATGAGAATGAACTTGACGACATTCAAATCGAGTTGGAATGTACAGACATGAAGCCCAATTTATTGGCCGTAgcgaaaattgaagatttctCTCCAAATCACTGGCAAGATAACAATGATTACAAAACTggaagcaaaattaaattagaaaatatcgGGACAgtgaagaaagaaattttaagcGAAGAAGCCACTGTATTCAATTTCGGACGTGGactcaacgaaaaaaatgagaaagaatGTGTTGGAAAGTCGAACTATAAGAAGAGTCTCAAATCACACGTGGGTATGGTTCGAAGTGGTGTCAaacatgcatgcgatatatgccaaaagacattctcagaaAAGAGTAATCTGAAAAAACACATGGATTCGGTGCATCATAAAATAAGGCATGCATGCCATacatgccaaaagacattctcacaCAAGAGTAATCTTAGAaatcacatcgattcggtgcataatggaaTTTCACATACGTGCAATATATGCCCAAAGACATACTCGGACAAAAGAagtctcaaaaaacacatcgattcggtgcacaatCGAGTCCGACACGAatgcgatatttgcggaaagatttttaaactgaaggaaaatctcaaaaaacacgtCGATTCGCtacataatggtatcacatattcgtgtgatatttgcgggaAGACATTCGCACTAAAGAGCagtcttaaaaaacacatcgaatCGGTACATAATGGCatttcacatgcatgtgatatttgcgaaaagacattcacacaaaagggtcatctcaaaatccacatcgatgcggtgcataatggtatcacatattcgtgtgatatttgcgggaAGACATTCGCACAGAAGAgtcatctcaaaatccacatcgattcggtgcattaTGTGGTCAGACATGCGTGTGGTatatgccaaaaaaaattctcacacAAAGTTagtctcaaaaaacacatcgattcggtgcataatggcatttcacatgcatgtgatatttgcgaaaagaTATTCACACAGAAGAGTCATCTCAAAATCCATATCGATATGGTGCACCGTAAAATCACTCATCCATGTGAtaaatgccaaaagacattctcaggCAAGAATGGTCTCACcaaacacatcgattcggtgcacaatCGAGTCCGACACGAatgcgatatttgcggaaagatttttaaactgaaggaatatctcaaaaaacacatcgattcgctacataatggtgttagacttgcatgtgatatatgtaaAAGGACATTCTCAACCAAAAGTAATCTCAAGaatcacatcgattcggtgcataatgatGTCATCCATTCGTGCAAAACctgcggaaagacattcagaTGGAAAAGAAGTGTTAAAGCTCATATCGACATGGCGCATAACTCGCGCAATcagatttaa
- Protein Sequence
- MRFTTSKMESGDLFNPDIRVKEEARDDPLNDDDGYKIIDTTLAVPQNVKYERSWHENSTQGLQEYGENHENELDDIQIELECTDMKPNLLAVAKIEDFSPNHWQDNNDYKTGSKIKLENIGTVKKEILSEEATVFNFGRGLNEKNEKECVGKSNYKKSLKSHVGMVRSGVKHACDICQKTFSEKSNLKKHMDSVHHKIRHACHTCQKTFSHKSNLRNHIDSVHNGISHTCNICPKTYSDKRSLKKHIDSVHNRVRHECDICGKIFKLKENLKKHVDSLHNGITYSCDICGKTFALKSSLKKHIESVHNGISHACDICEKTFTQKGHLKIHIDAVHNGITYSCDICGKTFAQKSHLKIHIDSVHYVVRHACGICQKKFSHKVSLKKHIDSVHNGISHACDICEKIFTQKSHLKIHIDMVHRKITHPCDKCQKTFSGKNGLTKHIDSVHNRVRHECDICGKIFKLKEYLKKHIDSLHNGVRLACDICKRTFSTKSNLKNHIDSVHNDVIHSCKTCGKTFRWKRSVKAHIDMAHNSRNQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485115;
- 90% Identity
- iTF_01485115;
- 80% Identity
- iTF_01485115;