Tpre010356.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:174311-176452[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0054 0.4 10.2 0.7 19 43 160 181 153 182 0.91 2 11 0.16 12 5.5 2.3 18 44 188 211 185 211 0.88 3 11 0.073 5.4 6.6 1.3 19 43 217 238 214 243 0.74 4 11 0.078 5.8 6.5 0.9 18 43 244 266 241 267 0.93 5 11 0.0044 0.33 10.5 0.5 18 44 272 295 269 295 0.93 6 11 0.004 0.3 10.6 0.3 18 43 300 322 297 323 0.91 7 11 0.022 1.7 8.3 1.2 18 44 328 351 324 351 0.91 8 11 0.0022 0.17 11.4 0.1 18 43 356 378 354 379 0.94 9 11 0.0068 0.5 9.9 2.5 18 44 384 407 382 407 0.91 10 11 5.6 4.2e+02 0.6 0.7 19 39 413 430 410 437 0.73 11 11 0.033 2.4 7.7 2.1 17 44 439 463 424 463 0.84
Sequence Information
- Coding Sequence
- ATGGATCCCAATAGTACATTTGATTCTGCTATcagaataaaaaaggaacCCATCGATGCATCGCTCATTGAATATGATAACAATGTGATTGACAAGCCCCCcgatgttgaaaattttcaattctcaaGACTTCAGCGAGTATATTCGACGCTTCAAGAATGTAacgaaaatcataataatggACTTGACGAAATCAAAGTTGAAATCGAATGTAGGGACGTGAAGCccgaatttaatttattagcAGTTACAAAAATTGAGGATTGTACTCAACATCGATTGCAGCACACGATATATAGCGACGACTACACGAGTCAAAACATCATAAAAATAGAGACTgtgagtaaaataaaagaagaaatcaATTCAAATTTCGATCTTGAACTTaacgagagaaacaaaaagacCGAAAAGCTCAACAATATCGATAGAGTCAAAACCAACATTGGTATGATGCATAGTGGAGCAGTCTATTTATGCAAAACATGCGGAAAGACGTTTAAACGCAAATTCAATCTGGATAGGCATGTTAAATCAACGCATGATGGGGTTACACTACATAAATGCATTACATGTGAAAATACGTTTAAGTACAAGTTCAATCTGGACAAGCATGTTAAATCAACGCACAATGTTGTTACATATGCATGTAATAcatgcggaaagtcattttcacgaaaatttaGTCTCAAagtccacatcgattcagtgcacAATTGTGttacacatacatgcattaCGTGTGGAAAGATGTTTAAAAGCAAGTTCAATCTGGATAGGCATGTTAAATCAACGCATGATGGTGTTACATATGAATGCGATACGTGTGGAAAGAAGTTTACGCAAAAGGaaaatctcaaaactcacatcaaTACGTTACATAATGGTGTCAAATTTGCATGTGACATATGcggaaaaaaacttaaaaataagagttatctcaaaactcacatcgattcggtgcatctAGGTACCACTCATGCATGTGATttgtgcgaaaagaaattcacacAGAAGCGTAATCTTAAAGCCCACATCGATATGATGCACAATGGTGTCGCACCTACTTGTGATATATGCaggaagaaattttcaacgaaaagcAGTCTCAAACAAcatatcgattcggtgcactACGGTGTCACTcacgaatgtgatatttgtggaaagataTTTTCACATAAAGGTAATCTCAAACATCACATAGATGCGGTGCATAATGGAATCATACACTCATGCGATAGATGTGATAAGACTTTTAAACGTAAGGACAAGCTGAAGATCCACATCGATTTGGTTCATCAATGTTCGACTCACACTTGTGGAGAATGCGGAAAAAATttcggacgaaaaaaaaatctctttgcCCACATGGATATGGCACATCGCTCTCGTATAACTACCcgataa
- Protein Sequence
- MDPNSTFDSAIRIKKEPIDASLIEYDNNVIDKPPDVENFQFSRLQRVYSTLQECNENHNNGLDEIKVEIECRDVKPEFNLLAVTKIEDCTQHRLQHTIYSDDYTSQNIIKIETVSKIKEEINSNFDLELNERNKKTEKLNNIDRVKTNIGMMHSGAVYLCKTCGKTFKRKFNLDRHVKSTHDGVTLHKCITCENTFKYKFNLDKHVKSTHNVVTYACNTCGKSFSRKFSLKVHIDSVHNCVTHTCITCGKMFKSKFNLDRHVKSTHDGVTYECDTCGKKFTQKENLKTHINTLHNGVKFACDICGKKLKNKSYLKTHIDSVHLGTTHACDLCEKKFTQKRNLKAHIDMMHNGVAPTCDICRKKFSTKSSLKQHIDSVHYGVTHECDICGKIFSHKGNLKHHIDAVHNGIIHSCDRCDKTFKRKDKLKIHIDLVHQCSTHTCGECGKNFGRKKNLFAHMDMAHRSRITTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485219;
- 90% Identity
- iTF_01485219;
- 80% Identity
- iTF_01485219;