Tpre012405.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:412815-414731[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.5 6.3e+02 -0.0 1.0 22 40 172 187 165 189 0.77 2 10 0.16 12 5.5 0.6 18 30 196 210 193 222 0.76 3 10 0.0014 0.1 12.1 0.2 19 43 225 246 223 247 0.95 4 10 0.14 10 5.7 0.4 18 43 252 274 250 276 0.84 5 10 0.45 33 4.1 6.5 18 43 280 302 274 303 0.91 6 10 0.0014 0.1 12.1 3.0 18 44 308 331 304 331 0.93 7 10 4.6e-05 0.0034 16.9 2.0 15 44 333 359 331 359 0.91 8 10 0.53 40 3.8 1.4 15 38 361 381 360 387 0.74 9 10 0.0069 0.52 9.9 1.3 14 43 388 414 379 415 0.79 10 10 0.00047 0.035 13.6 1.9 18 44 420 443 414 443 0.91
Sequence Information
- Coding Sequence
- ATGGATCCCACTGGTTTATTCAACTGTGctgtcagGGTAAAAGAGGAGCCAAATGATATTTCTAGTAGTGAAAACGATCGCGAGATGATTGACGAGAAACCCGATCTAAAAAACTTTCAACCTTCACCATTTCCACCAGAAAACTCAACACATATCCTTCGAAAATGCGACGTCAATCATGAAAGTGAACTTGGTGACCAAACcgaaatagtttttgaatgtgaagacgtcaagcccaattttaatttattagcCATCAAGAAAATTGACGATGATTCGCCTAATTACTCACGTAATGTACAATATAGTAAAgagtttaaaaatcaaaacataattaaaaaagaaccTTCAAATAAAGTAAAACTGGAATTTTTTGGTGACGCTGCGGAAGAATCGAATTCCGACTGTGAATTTATCaaacaagataaaaaaagaaaaactacaaaaaagtttaataacaaatataacctcaaaacacgcagcagcacagtGCATAATAACACAACACACGCATGCAGAAAGAAATTCCTAACGAAGAGTAATCTTAAAAATCACATTAATGCGGAGCAGTTTGGTATCACATACGTGTGCGATATTTGTGGAAATGTATTCAAACGAAAATGTGATATCAGAACTCACATGGATGGAGTTCACAATGGTATCACGTATccgtgtgatatttgcggaaagaaattctcgACGAAGggtaatctcaaaacccaTATCAATTCAGTGCACTATAAAATCACTCATGAATGTGATATATGTGGCGAGTCATATACTCAAAAAGGTTCTCTCAAAACCCATATCGATTCAGTGCATCATAAAATCATtcatgaatgtgatatttgtggcaAGAAATGTTCACTAAAAGCTAATctaaaaaatcacatcgattcggtgcatcataaaatcattcatgaatgtgatatttgtggcaAGAAATGTTCACGAAAAGCTAATctaaaaaatcacatcgattcggtgcataataaaaCCATtcatgaatgtgatatttgtggcaAGAAATACTCAAATAAGATTAATCTCAAGAGACACATCGATTCTGTGCATAACGGTAACAAACATAAATGTGTTAAATGTGATAAgtcattttcacgaaaatatgatctgaaaatccacatcgattcggtacaTGACAAAATCATTAATACATGTGacatttgcggaaagaaattctcgACGAAGggtaatctcaaaattcacattgatGCGGTGCACAATAATATCATtcatgaatgtgatatttgcgagaagaaatactcaaataattttaatctcaagagacacatcgattcggtgcacaatggtgtcaaacATGCACGTGGTAAATGCGTATAA
- Protein Sequence
- MDPTGLFNCAVRVKEEPNDISSSENDREMIDEKPDLKNFQPSPFPPENSTHILRKCDVNHESELGDQTEIVFECEDVKPNFNLLAIKKIDDDSPNYSRNVQYSKEFKNQNIIKKEPSNKVKLEFFGDAAEESNSDCEFIKQDKKRKTTKKFNNKYNLKTRSSTVHNNTTHACRKKFLTKSNLKNHINAEQFGITYVCDICGNVFKRKCDIRTHMDGVHNGITYPCDICGKKFSTKGNLKTHINSVHYKITHECDICGESYTQKGSLKTHIDSVHHKIIHECDICGKKCSLKANLKNHIDSVHHKIIHECDICGKKCSRKANLKNHIDSVHNKTIHECDICGKKYSNKINLKRHIDSVHNGNKHKCVKCDKSFSRKYDLKIHIDSVHDKIINTCDICGKKFSTKGNLKIHIDAVHNNIIHECDICEKKYSNNFNLKRHIDSVHNGVKHARGKCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485261;
- 90% Identity
- iTF_01485261;
- 80% Identity
- iTF_01485261;