Tpre010967.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:145690-147871[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0039 0.29 10.7 3.4 14 43 168 196 156 204 0.84 2 12 0.77 58 3.3 0.3 33 44 214 225 203 225 0.84 3 12 0.32 24 4.5 0.6 19 43 231 252 228 257 0.77 4 12 0.0021 0.15 11.6 0.3 19 44 259 281 254 281 0.94 5 12 0.0039 0.29 10.7 0.6 18 44 286 309 282 309 0.93 6 12 0.028 2.1 7.9 0.7 19 44 315 337 312 337 0.93 7 12 0.16 12 5.6 1.7 19 43 343 364 341 365 0.79 8 12 5.8 4.3e+02 0.5 0.7 19 29 371 381 368 397 0.81 9 12 0.0012 0.093 12.3 1.0 19 44 399 421 394 421 0.95 10 12 0.79 59 3.3 0.2 19 43 427 448 424 449 0.87 11 12 0.00014 0.011 15.3 1.1 19 44 455 477 452 477 0.94 12 12 0.03 2.2 7.9 0.6 18 44 482 505 480 505 0.93
Sequence Information
- Coding Sequence
- ATGATATTTCCAACGAGGAAGATGGAATCTGGTAATTTATTCAATCCTGATATTAgagtgaaagatGAGCCTCGTGATGACCCTctcaatgatgatgatggttataaaataattgtcacGACACCCGTCactcaaaatattaaatacgaAAGGTTCCAGCCCAAAAATTCAACCCAAAAGCTTCTTCAAATTTATGACGAAAATCACGAAAATGAACGTGATAACATCCAAATCGAATTGGAATGTATAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATCATTCTCCAAATCAATGGCAGGATAGCGATGATTATAAAAGCGgaagcaaaataaaactcgAAACTGTCGGGACagtgaagaagaaaattttaagcGAAGAAGAGACTGATTTGAATTTCAGACGTGGACTCAGCGAGCAAAATAAAACAGGAACTGCCTCAAAAGAGCTGAACAATGAAAATAGGCTCAAAACTCACAATGATACTAggcataataaaatcacacatgattgtgatatttgcggaaaatcattcaaatataAGAGTAATCTCCAAACACACATGGATTCGGTGCATTGTAAAATTAGGCATGCATGCGATACATggcaaaagacattctcagacaGAAGTAATCTCAGAaatcacatcgattcggtgcaccGTAAAATCACGCATTCATGTGGTATATGCCAAAAGATATTCACACAAAAAGCTTATCTCACAATCCACATCAaatcggtgcataatggtgacagacatgcatgcgatatttgcggaaaTATGTTCAAACAAAGAACTGGTCTCAAACGCCACATAGATTCGGCGCATAATGAAGTCAGGCatacatgcgatatatgccaaaagacgtTCTTAGACAAgagtaatcttaaaaaacacatcgattcggtgcataatggtgtcagacatgcatgcgatatatgccaaaCGACATTCTCAGACAAGAGTAGTCTAAAGAggcacatcgattcggtgcacaagCGAGACGGACATGCATGTGACatttgtgaaaagacattctcacAAAAAAGTCATCTCAAAACCCACACCGAATCGGTGCATTATGGTatttcacatgcatgtgacgtatgtggaaagacattcacacagaATTGTCAACTCAAAGTCCACACCGATTCGGTGCACCGTAAAATTACGCATCCATGCGATATATGCTTAAAGACATTCTCAACCAAAAGTAATCTCAGATATCACATCAATTCGGTGCACAACCGGGTCCGATATTCATGTGATAAATGCCTaaagacattctcagacaAGAGTAGTTTCAAAAAGCATATGGATGCAGAGCATATTGGAATCACCTATTCATGTGatttttgtggaaaaaaatataaatatcaaactAATCTGAGTAAGCATGTCAAATCTTCGCATAATGGCATCATTCATAAATGCGCGACATGCGGAAAGCCATTcggacagaaaaaaaatcttaaagcTCATATCGACACGGCGCATAAGTCACGTAATCAGACatgttaa
- Protein Sequence
- MIFPTRKMESGNLFNPDIRVKDEPRDDPLNDDDGYKIIVTTPVTQNIKYERFQPKNSTQKLLQIYDENHENERDNIQIELECIDMKPNLLAVAKIEDHSPNQWQDSDDYKSGSKIKLETVGTVKKKILSEEETDLNFRRGLSEQNKTGTASKELNNENRLKTHNDTRHNKITHDCDICGKSFKYKSNLQTHMDSVHCKIRHACDTWQKTFSDRSNLRNHIDSVHRKITHSCGICQKIFTQKAYLTIHIKSVHNGDRHACDICGNMFKQRTGLKRHIDSAHNEVRHTCDICQKTFLDKSNLKKHIDSVHNGVRHACDICQTTFSDKSSLKRHIDSVHKRDGHACDICEKTFSQKSHLKTHTESVHYGISHACDVCGKTFTQNCQLKVHTDSVHRKITHPCDICLKTFSTKSNLRYHINSVHNRVRYSCDKCLKTFSDKSSFKKHMDAEHIGITYSCDFCGKKYKYQTNLSKHVKSSHNGIIHKCATCGKPFGQKKNLKAHIDTAHKSRNQTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485174;
- 90% Identity
- iTF_01485174;
- 80% Identity
- iTF_01485174;