Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:317271-319418[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.76 56 3.4 0.6 13 44 162 190 156 190 0.84

2 14 0.15 11 5.6 0.4 19 43 224 245 213 247 0.82

3 14 0.00086 0.064 12.8 0.3 19 44 252 274 241 274 0.90

4 14 0.46 34 4.0 0.4 19 39 280 297 277 302 0.75

5 14 0.0003 0.023 14.2 2.0 3 43 293 329 291 330 0.85

6 14 0.017 1.3 8.6 1.1 18 43 335 357 332 358 0.89

7 14 5.4 4e+02 0.6 4.1 19 43 364 385 361 390 0.69

8 14 0.018 1.4 8.5 0.9 19 43 392 413 385 415 0.87

9 14 0.0018 0.13 11.8 0.5 19 43 420 441 414 442 0.90

10 14 1.5 1.1e+02 2.4 0.5 18 36 447 462 442 470 0.75

11 14 0.0083 0.62 9.6 1.1 19 31 476 488 467 498 0.83

12 14 4.7 3.5e+02 0.8 0.3 21 43 506 525 505 527 0.78

13 14 0.046 3.4 7.3 1.1 19 43 532 553 525 554 0.89

14 14 0.0048 0.36 10.4 3.1 13 42 552 580 548 582 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.76	56	3.4	0.6	13	44	162	190	156	190	0.84
2	14	0.15	11	5.6	0.4	19	43	224	245	213	247	0.82
3	14	0.00086	0.064	12.8	0.3	19	44	252	274	241	274	0.90
4	14	0.46	34	4.0	0.4	19	39	280	297	277	302	0.75
5	14	0.0003	0.023	14.2	2.0	3	43	293	329	291	330	0.85
6	14	0.017	1.3	8.6	1.1	18	43	335	357	332	358	0.89
7	14	5.4	4e+02	0.6	4.1	19	43	364	385	361	390	0.69
8	14	0.018	1.4	8.5	0.9	19	43	392	413	385	415	0.87
9	14	0.0018	0.13	11.8	0.5	19	43	420	441	414	442	0.90
10	14	1.5	1.1e+02	2.4	0.5	18	36	447	462	442	470	0.75
11	14	0.0083	0.62	9.6	1.1	19	31	476	488	467	498	0.83
12	14	4.7	3.5e+02	0.8	0.3	21	43	506	525	505	527	0.78
13	14	0.046	3.4	7.3	1.1	19	43	532	553	525	554	0.89
14	14	0.0048	0.36	10.4	3.1	13	42	552	580	548	582	0.83

Sequence Information

Coding Sequence: ATGATAAAACTTGTGTCGGAGAGAACAATCAACAAAATGGAATTCAACGGTACCATCGATTACGCTGCcaaAGTAAAGGAAGAGCCCGAGGATATGTCGCTTCACGAGGATGATGATTATCGAATAGATGACGATACTTTTGATACCAAAAGTTTTCAAGACGAATCAACTCGTATGTTTAAAAGAAGCCAAGAAACTCACGAAACTCAATCGAACCACGAGATTGAGATTGAGATCGAATGCGTAGATGTAAAACCGATCGTAAATTCATCAGTACCTAAACGGTTAGATAATTGGACgaaaaatcacttgctgcatATTCAAGAAGGCAGTGATTTTGAAGCTAAAGCTAAGATAAAAATAGAACCCGAAGATGCTGTGAAAGAAGAATTTTCATATGATGATATTGATAAAGATATAAGTAATGATTGCGAAATTAAcgaacaaaatataaaaattgatcctCAAGAATCAGCAAAAATAAGTGAAAAGTATACAGAGTGCGACAAGTGTTTGAAGAAATTTCCCAACAAAAGAAGTCTTAAAATTCACATGAATTCAGTGCACAGTAATAATCTGTATCCATCTCAAGcgtgtgaaaagacatttggacaaaagGATATTTTGAATGTCCATaccgattcggtgcataataaaataactagTGCATGTGAAATATGCGGAAATGTGTTCAAACGAAGATATGATCTCATTAGACATATCGATGCGATACATCGTAAAATCACCTAcccatgtgatatttgcggaaagacataCTCAGACAAGAGTactctcaaaaaacatatcgATTCgctgcataatggtgtcacatattcgtgtgatatttgcgggaAGACATTCGCACTAAAGAACAGTCTCAAAAAACACTTCGAGTTGGTACATAATGGCatttcacatgcatgtgaaatatgccaaaagacattctcagacaagagcaatctcaaaaaacacatcgattcggtgcatgaTGGTGTCAGACATGAatgcgatatttgcggaaagacataCTCAGACAAGAgtcatctcaaaatccacatcgattcggtgcattaTGTGGTCAGACATGCGTGTGgtatatgccaaaagacattcacacagaagtgtcatctcaaaatccatatcgattcggtgcataataaaataactcatGCATGTGAAATATGCGGAAATGTGTTCAAACGAAGATCTGATCTCATTAGACATATCGATGCGATACATCGTAAAATCACCTACCCATGtaatatttgcggaaagacataCTCAGACAAGAGTTATCTTAAGAAACACATCGATGCGGTGCATAATAGTATTtcttacgcatgtgacaaatgcgaaaagactTTTACGCAGAATTCTTCACTGACTATTCACATCAATGCAATACATGGTAAAATCACCTACCCATGTAatatatgtggaaagacattcaacCGAAAGAATTCTCTAAATGTCCATAGCGATTCGGTACACAATAAAAATACTCACGCAGGTGACAAATGCGGGAAGACATTTTCAGATAAGAGTAATAGGAGAAAACACATCAATGTGATACATCGTAAAATTACCTAtccatgtgatatttgtggaaagacattcacacaaaaggGAAATCTCATAACCCATACCAACTCGgagcataataaaaatacttgtgacaaatgcggaaaaaaattcgtgcaaaaaaacaaacttatTGCTCATATCGACGCGGTACACAATCATGTCAAGCCTGACAAGTGCCGATAA
Protein Sequence: MIKLVSERTINKMEFNGTIDYAAKVKEEPEDMSLHEDDDYRIDDDTFDTKSFQDESTRMFKRSQETHETQSNHEIEIEIECVDVKPIVNSSVPKRLDNWTKNHLLHIQEGSDFEAKAKIKIEPEDAVKEEFSYDDIDKDISNDCEINEQNIKIDPQESAKISEKYTECDKCLKKFPNKRSLKIHMNSVHSNNLYPSQACEKTFGQKDILNVHTDSVHNKITSACEICGNVFKRRYDLIRHIDAIHRKITYPCDICGKTYSDKSTLKKHIDSLHNGVTYSCDICGKTFALKNSLKKHFELVHNGISHACEICQKTFSDKSNLKKHIDSVHDGVRHECDICGKTYSDKSHLKIHIDSVHYVVRHACGICQKTFTQKCHLKIHIDSVHNKITHACEICGNVFKRRSDLIRHIDAIHRKITYPCNICGKTYSDKSYLKKHIDAVHNSISYACDKCEKTFTQNSSLTIHINAIHGKITYPCNICGKTFNRKNSLNVHSDSVHNKNTHAGDKCGKTFSDKSNRRKHINVIHRKITYPCDICGKTFTQKGNLITHTNSEHNKNTCDKCGKKFVQKNKLIAHIDAVHNHVKPDKCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485059;
90% Identity: iTF_01485059;
80% Identity: iTF_01485059;