Tpre003727.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1447127-1449972[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 9.6 5.8 0.7 19 43 170 191 154 192 0.87 2 11 4.1 3.1e+02 1.0 0.8 19 29 198 208 196 220 0.73 3 11 0.0037 0.28 10.7 2.1 6 43 214 247 209 249 0.77 4 11 2.3 1.7e+02 1.8 0.3 18 40 253 272 251 276 0.72 5 11 5.7e-05 0.0042 16.5 1.7 18 44 281 304 268 306 0.89 6 11 0.022 1.7 8.3 0.4 18 43 310 332 305 333 0.84 7 11 0.011 0.78 9.3 0.6 19 43 339 360 325 361 0.88 8 11 1.9 1.5e+02 2.0 0.2 19 43 367 388 364 389 0.82 9 11 7.1e-06 0.00053 19.4 4.1 9 44 386 417 378 417 0.80 10 11 0.039 2.9 7.5 2.0 15 43 420 445 418 446 0.80 11 11 0.32 24 4.5 6.0 18 43 451 473 437 477 0.77
Sequence Information
- Coding Sequence
- ATGGAATCAAGTGTGGTATTCAATAGTATcgttagagtgaaaaaagaaccAATCGACGTGTTGCTCGGTGAAAATGATTACATTGTAATCGACAAGACAGCCGAtgtcaacaattttcaattcttaaGGCATCCGCAAGAAAATCAAatTCAAAAATCTGACGAAAATCACGAAAGTGAACTTGATGACTTGGCGATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGCAGttacgaaaattgaaaattgttctgAAGATCACTTGGCAgctattgaaaattgtaacgAATATCAAACTcaaaacataattaaattagAAGCTTTGGAtgctgtaaaaaaagaatcgtttGTGGACGACGCAAATCAATTGAGTATGAACTCAAACTGTAAACTCAGCGAGCcaacgaaaagaaaaacagttgtaaaaaatgtaaattataatcataaacTCCAAAAACATATTGATATGccgaataataaaatcacataTCCTTGTGATACATGTGGAAAGGCATTCGCACATAAGAGCAATCTTAAAATACACATCGATTCGACGCATCTTAAAATCACTCATGGCTGTGACTTCTGTGGAAAGTCATtctcatgtaaaatttatctgaaaaaacACATTGAAGCAATACATAATGGTAAAGCTCccacatgtgatatttgcggaaagacgttctctcaaaaaagtcatttgaaATCTCACATCGACGCGGTGCATCATAAAATTACTCATACCTGtgacttatgtgaaaagtcaTTCTCACTTCAAGGTGATCTCAAGAAACATATTAAAGCGATACATAATGGTGAAACTCCCACGTGTGATATCTGTGGAAAGACGTTCTCTCGAAAGAGTAATCTTCaaacccacatcgattcggttcATAATTGTCGAGAAGGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGATATTCTAAAATCTCATATCGATTCGATACATAATAGTATCACCTACCCATGCGATttttgcggaaagacattttctcaaaaaagttatttgaaaTCTCATATCGATTCGACGCATCTTAAAATCACTCATGGCTGtgacttatgtgaaaagtcaTTCTCACTTAAAGATtctctcaaaaaacatattgaaGCGATACATAATGGTAAAACTCccacatgtgatatttgcggaaagacgtTCTCTCAAACGAGTTGTCTTCGCACCCACATTAACTCAGTGCATAATAGTCAAAAAAGTTGTGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGTATATTCTGAAATCTCATATCGATTCGATTCATAAAGGCATCATCTACCCATGtcatatttgcggaaagacataCAGTCAAAAAGGAAAGCTCAATAGTCATATCAAAAAGGTGCATAACAATACCACATATGCATGCGAGACGTGCGGAAAgatatttggacaaaaaataaatcttcaaAAACACATCGATATGGCGCAGCATTCACGCATCAGCATCACGACTTAA
- Protein Sequence
- MESSVVFNSIVRVKKEPIDVLLGENDYIVIDKTADVNNFQFLRHPQENQIQKSDENHESELDDLAIELECKDMKPSLDLLAVTKIENCSEDHLAAIENCNEYQTQNIIKLEALDAVKKESFVDDANQLSMNSNCKLSEPTKRKTVVKNVNYNHKLQKHIDMPNNKITYPCDTCGKAFAHKSNLKIHIDSTHLKITHGCDFCGKSFSCKIYLKKHIEAIHNGKAPTCDICGKTFSQKSHLKSHIDAVHHKITHTCDLCEKSFSLQGDLKKHIKAIHNGETPTCDICGKTFSRKSNLQTHIDSVHNCREGYECDVCGKKFSRKDILKSHIDSIHNSITYPCDFCGKTFSQKSYLKSHIDSTHLKITHGCDLCEKSFSLKDSLKKHIEAIHNGKTPTCDICGKTFSQTSCLRTHINSVHNSQKSCECDVCGKKFSRKYILKSHIDSIHKGIIYPCHICGKTYSQKGKLNSHIKKVHNNTTYACETCGKIFGQKINLQKHIDMAQHSRISITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485137;
- 90% Identity
- iTF_01485137;
- 80% Identity
- iTF_01485137;