Tpre006924.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1076527-1078977[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3e-05 0.00093 18.7 1.8 10 44 89 120 84 120 0.90 2 10 0.0088 0.66 9.5 1.0 19 44 126 148 124 148 0.90 3 10 0.17 13 5.4 0.1 17 44 152 176 150 176 0.89 4 10 0.0091 0.68 9.5 3.3 19 43 182 203 179 204 0.94 5 10 0.16 12 5.5 0.3 19 43 210 231 207 232 0.79 6 10 0.06 4.5 6.9 4.1 13 43 232 259 223 260 0.81 7 10 0.22 17 5.0 0.0 18 43 265 287 262 288 0.82 8 10 0.0038 0.28 10.7 3.3 16 43 291 315 282 316 0.88 9 10 3.3 2.4e+02 1.3 0.1 34 44 334 344 333 344 0.93 10 10 0.0013 0.099 12.2 2.0 14 43 345 371 341 372 0.88
Sequence Information
- Coding Sequence
- ATGAAGCTCAACGTGGATTTATTAGCAGttgcgaaaattgaaaattgttctcAAAATAACTCGCCGGATATGAAAAATAGACACGATTATCAAACTCAAGAcaatattaaaatagaaactttgggagcagtaaaaaatgaatcatttgTGGACGACGCAAAACAATTGAATATGGATTTCTACTGTGGTCTCAGCGAGCCAAGTGAGGAAAACAGTGTCACAAAAGAGTTGATCGATGACCATAGACTCGAAACGCAAACCATAACGACGCGTAGTAGTACTGACATTGCATGCGAGATATGCAGTAAAAAATTCTCAAGGAAATATTGTCTCAAAAGTCACATCgtttcggtgcataatggtgtcacccacgcatgtgatatatgcggtaAGACATTTTCAACGAAGGGTTATCTAAAAAACCACCTCGACTCGATGCACAATGGTGTTTCAAATGTTTGTGATAcatgcggaaagtcatttgCTGCTAAAAGCTATCTCAAAgttcacatcgattcggtacaTAATGGTATTACTCACGCGTGTGATATATGCAGAAAGAAATTCACTGAAAAGAacaatctcaaaaaacacatcgattcggtgcatcaCAAAATCACTCacgcatgtgatatatgcggaaagtcatttacCCAGAAAGGTAGTCTGAAAACCCACATCATTGCGGTGCATAAAGAAATCAAACATACATGTGATTTGTGCGGAAAGATGTATACTCGAaaggtttttttcaaaagacaTGTAAAATCTTCCCATGAGGGTATCAACtacgcatgtgatatatgcggcaAGGCATTTAATGATAGCAGCTATCTAAAAATCCACATTGACGCAGTGCATAAAGGTATCAAACATTCATGTGATTTATGcggaaaaatgtataatcgAAAGAGTGATCTCAAAAGACATGTAAAATCTTCTCATACGGGTATCACTCAAGAATCGGATACACGTGGAAAAATATGTGTGAATCCATTTGGTCTCCGACAACATGTCAAATCATCGCATCCAAGTTATATCtatgcatgtgataaatgcggtaagtcattttcacaaaagaaaAACCTTAAAGCCCACATGGTTATGGCCCATCACTGA
- Protein Sequence
- MKLNVDLLAVAKIENCSQNNSPDMKNRHDYQTQDNIKIETLGAVKNESFVDDAKQLNMDFYCGLSEPSEENSVTKELIDDHRLETQTITTRSSTDIACEICSKKFSRKYCLKSHIVSVHNGVTHACDICGKTFSTKGYLKNHLDSMHNGVSNVCDTCGKSFAAKSYLKVHIDSVHNGITHACDICRKKFTEKNNLKKHIDSVHHKITHACDICGKSFTQKGSLKTHIIAVHKEIKHTCDLCGKMYTRKVFFKRHVKSSHEGINYACDICGKAFNDSSYLKIHIDAVHKGIKHSCDLCGKMYNRKSDLKRHVKSSHTGITQESDTRGKICVNPFGLRQHVKSSHPSYIYACDKCGKSFSQKKNLKAHMVMAHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485243;
- 90% Identity
- iTF_01485243;
- 80% Identity
- iTF_01485243;