Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:822740-825177[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.7 5.8e+02 0.1 0.2 33 43 157 167 149 168 0.85

2 15 1.4 1.1e+02 2.5 5.0 18 43 173 195 158 196 0.81

3 15 0.00014 0.011 15.3 0.2 19 44 202 224 199 224 0.95

4 15 0.021 1.5 8.4 0.9 18 39 229 247 228 251 0.91

5 15 0.3 22 4.6 2.9 18 30 254 269 248 281 0.72

6 15 0.0097 0.72 9.4 0.3 19 44 283 305 279 305 0.92

7 15 0.067 5 6.7 0.8 19 44 311 333 309 333 0.85

8 15 0.0005 0.037 13.5 0.6 11 44 332 361 324 361 0.77

9 15 0.57 42 3.7 1.9 18 30 366 385 363 393 0.69

10 15 0.009 0.67 9.5 2.0 18 44 394 417 378 417 0.79

11 15 6.3 4.7e+02 0.4 1.6 18 30 422 436 418 444 0.78

12 15 7.3e-05 0.0055 16.2 1.3 18 44 450 478 440 478 0.92

13 15 0.00019 0.014 14.9 1.2 18 44 482 505 479 505 0.93

14 15 0.051 3.8 7.1 1.7 19 44 511 533 508 533 0.92

15 15 0.093 6.9 6.3 2.1 19 43 539 560 536 561 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.7	5.8e+02	0.1	0.2	33	43	157	167	149	168	0.85
2	15	1.4	1.1e+02	2.5	5.0	18	43	173	195	158	196	0.81
3	15	0.00014	0.011	15.3	0.2	19	44	202	224	199	224	0.95
4	15	0.021	1.5	8.4	0.9	18	39	229	247	228	251	0.91
5	15	0.3	22	4.6	2.9	18	30	254	269	248	281	0.72
6	15	0.0097	0.72	9.4	0.3	19	44	283	305	279	305	0.92
7	15	0.067	5	6.7	0.8	19	44	311	333	309	333	0.85
8	15	0.0005	0.037	13.5	0.6	11	44	332	361	324	361	0.77
9	15	0.57	42	3.7	1.9	18	30	366	385	363	393	0.69
10	15	0.009	0.67	9.5	2.0	18	44	394	417	378	417	0.79
11	15	6.3	4.7e+02	0.4	1.6	18	30	422	436	418	444	0.78
12	15	7.3e-05	0.0055	16.2	1.3	18	44	450	478	440	478	0.92
13	15	0.00019	0.014	14.9	1.2	18	44	482	505	479	505	0.93
14	15	0.051	3.8	7.1	1.7	19	44	511	533	508	533	0.92
15	15	0.093	6.9	6.3	2.1	19	43	539	560	536	561	0.91

Sequence Information

Coding Sequence: ATGCCCCGCAGATGTCTATTTAACTGTACCAGCAGCGTGAAAGAGGAACCTAGCAATGTTTTGCCGAATGAAAATGATTGGGAAAAGATTGACGAGAAACCCGATCTCGAGAGCTTCCAACTCTTACCACATCTGCCAGAAAATTCGACCGATAACCTTcgtaattttgataaaaatcatgaCAGTGAATTTGATGACGaagtaaaaattatcgttGAATGTGAAGACGTCAAGCCCAACATTAATTcgttaaaagttgaaaaagttgaCGATGATTCCGAAAATCACTTGCAGAGTATGAAGTGCAGCGATGattataaaactaaaaacataattaaaatagaacCTTTGGTGTCAGTAAAACAAGAAATTGTGGGTGACACTGAAGAGAAATCGAATTTGATATTCGACCCTATGCTTGTCGAACAGATAGAAAAACAAAGAGTTACAAAAAAACTCAACAAAGATCGTAAcctcaaaacccacatcgattcggtacatcataaaattacgcatgcaTGTGTTAAATGtggcaagaaattttcatacaaGTATACtctcaaaaagcacatcgACTTTGTACATAATGGTATTACTCATGCTTGTGTtatatgcggaaagacataCTCAGACAAGAGTactctcaaaaaacatatcgATTCGGCTCATAGTGATGCCCCACCTACTTGTGATATATGTGGAAAAACATTCTTAAGTAAGAGTAATCTCAAGAATCACATACACAAGGGTGTCATCCATATTTGTGATGTATgtggcaaaaaattttcacgaaagaGTCATGTCAAAATCCATATCAATATCGTGCACAATGGTATTAGACACGCATGTGATAGTTGCGGAAAGAAATATTCTGAAAAGAGTAGTCTCAAAGCCCACATTGATTCAGTGCACAATGGTATTACTCATGCTTGTGTtatatgcggaaaaaaattctcaacaaAGGGTCATCTCAAAAACCACGTCGATTCGGCGCATAGTGATACCCCACCTACttgtgatatatgcggaaagacattctcaaGTAAGAGTAATGTCAAGACACACATTGACGTGGCACATAAGGGTGTCACCCATACTTGTGATGTATGtggcaagaaattttcacaaaagagTCATGTCAAAATCCATATCGGTAAGGCGCACAATGTTGTTAGACacgcatgtgatatttgcggaaagataTACTCTGAAAAGAGTagtctcaaaatccacattgaTTCAGTGCACAATAAAGTCaagcatgcatgcatgcaatgtggaaagtcattcacacaaaaatgttatctcaAAACCCACAGCGAATTGGTGCACAATCGGGTCACATGTgtatgtgatatatgcggaaagaaattttcaggAAAGAAGTTCTCAGAGAATGGTAGgctcaaaaaacacatcgattcaaTGCACAACAGTGttcatgcatgtgatatatgccaaaagacattctcagacaAAAGTAATCTCAAGAAGCACATCAATTCGGTGCACAAGCAAATCCGACATGCATGTGATACTTGTGGAAAGTCATTTACCCTTCAAAGTACTCTAAAAACCCACATCGTTACGAAACATAAAGATATGACCCACGCATGCGTCACATGTGGAAAAACATTCGCAAGTAAGAGTAATCTACAAAAACACATCAAGATGATACATAATGGTATTACttatgaatgtgatatttgtgtaGAGACTTTCACACACAAGTGTAGTCTAAACAAACACATTGTCGCGGTTCATAGAAAAATCTAA
Protein Sequence: MPRRCLFNCTSSVKEEPSNVLPNENDWEKIDEKPDLESFQLLPHLPENSTDNLRNFDKNHDSEFDDEVKIIVECEDVKPNINSLKVEKVDDDSENHLQSMKCSDDYKTKNIIKIEPLVSVKQEIVGDTEEKSNLIFDPMLVEQIEKQRVTKKLNKDRNLKTHIDSVHHKITHACVKCGKKFSYKYTLKKHIDFVHNGITHACVICGKTYSDKSTLKKHIDSAHSDAPPTCDICGKTFLSKSNLKNHIHKGVIHICDVCGKKFSRKSHVKIHINIVHNGIRHACDSCGKKYSEKSSLKAHIDSVHNGITHACVICGKKFSTKGHLKNHVDSAHSDTPPTCDICGKTFSSKSNVKTHIDVAHKGVTHTCDVCGKKFSQKSHVKIHIGKAHNVVRHACDICGKIYSEKSSLKIHIDSVHNKVKHACMQCGKSFTQKCYLKTHSELVHNRVTCVCDICGKKFSGKKFSENGRLKKHIDSMHNSVHACDICQKTFSDKSNLKKHINSVHKQIRHACDTCGKSFTLQSTLKTHIVTKHKDMTHACVTCGKTFASKSNLQKHIKMIHNGITYECDICVETFTHKCSLNKHIVAVHRKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485105;
90% Identity: iTF_01485105;
80% Identity: iTF_01485105;