Tpre007954.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:208789-211147[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.82 9.2 3.7 12 44 165 194 160 194 0.83 2 11 0.00045 0.033 13.7 0.3 19 43 200 221 197 222 0.94 3 11 0.23 17 5.0 1.0 19 36 228 242 225 254 0.68 4 11 0.00025 0.019 14.5 1.4 18 44 255 278 250 278 0.92 5 11 0.041 3 7.4 1.0 19 30 284 306 281 311 0.68 6 11 0.0066 0.49 9.9 0.8 14 44 307 334 295 334 0.79 7 11 0.028 2.1 7.9 0.7 19 29 340 350 337 365 0.76 8 11 0.12 9.3 5.9 0.5 18 44 367 390 357 390 0.86 9 11 0.027 2 8.0 0.6 19 29 396 406 393 421 0.76 10 11 0.0038 0.29 10.7 1.5 18 44 423 446 412 446 0.89 11 11 0.46 34 4.1 0.1 19 39 452 469 449 472 0.77
Sequence Information
- Coding Sequence
- ATGGAATCCAATGATAATGTACTCAAGTCTGctgtcagAGTCAACGAGGAGACTGGCATTACTGAAAATAATTGCGAGATGATGGACAAGAAACCTGATCCGAAAAACTTCCAATTCTTACCATTTGTGCTAGAAAATTCTaCTCATATCCTTTCAAAGTGTGACcttaaacttgaaaatgaatttgacAACGATGTGGAAATAGTCGTTGAATGTGAGGACGTGAAACCAAATGTGGATTcattaaaagttcaaaaagtGTATAATTATTCTCAAAATTGCTTGAACAATGTGATAAATAGTGATGGCGATAAagttcaaaatataattaaaatagaacCCTTGAAggaaataaaacaagaaatttttGGTGACGTTGCAGCAGGACTGAACTTGAATTTAGATAATGAACCAGTCaaacaaaatagaaaaagaagaattacaGAAAAGTGTAACAGCGAACGCAGACccaaaaaactaattatttcaGAGCATAATGATACAAGCCAAACatgtaaaatatgtaaaaagaaatttttacataagaaCAGTATAAGTAGGCATGTCAGATCATTTCATCAGTGTATTACTTACTCATGTGATGTATGCagcaagacattttcacaaaaaagtaatctcaaacAGCACATCAATTCAGTGCATGATGGTGTCATCCactcatgtgatatttgtggaaaatcattttcatccaAAAACTATATCAAAGACCACATAAATGCGGTGCACAATGGTATCAAACATTCATGTACTATTTGTGGAAAGACGTATCAAAGGAAGAATGATTTGACAAGGCACGTTCAATCAGCGCATAATGGTGTCAACCACTCATGTaacatttgtgaaaaatcattttcatccaaaaattatgtaaaagaCCACATAAATgcggtgcacaatggtgtcaaaaatttatgtgatatttgtggcaAGACGTTTATAAGGAAGGGTGATTTGACAAGGCACGTTAAATCAGCGCATAATGGTGTGACCTActcatgtaatatatgcggaaagacaCTCTCAACCAAATGGTATCTCCAAATCCACATTGAATCAATACACAATAGTATCACCTACTCATGTGATAATTGTGGTAAGACGTTTACAACGAAGGGTGATCTGACGAGGCACGTTAAATCAGCGCATAATGGTGTGACCTActcatgtaatatatgcggaaagacaCTCTCAACTAAATGGTATCTCCAAATCCACATTGAATCAATACACAATAGTATCACCTACTCATGTGATAATTGTGGTAAGACGTTTACAAGGAAGGGTAATCTGACGAAGCACGTTAAATCAgcgcataatggtgtcacttTCTCATGTGGTATTTGTGGAAAGAGATTTGCAACAAGTTCgtatctcaaaattcacatggATTCGgcaTGA
- Protein Sequence
- MESNDNVLKSAVRVNEETGITENNCEMMDKKPDPKNFQFLPFVLENSTHILSKCDLKLENEFDNDVEIVVECEDVKPNVDSLKVQKVYNYSQNCLNNVINSDGDKVQNIIKIEPLKEIKQEIFGDVAAGLNLNLDNEPVKQNRKRRITEKCNSERRPKKLIISEHNDTSQTCKICKKKFLHKNSISRHVRSFHQCITYSCDVCSKTFSQKSNLKQHINSVHDGVIHSCDICGKSFSSKNYIKDHINAVHNGIKHSCTICGKTYQRKNDLTRHVQSAHNGVNHSCNICEKSFSSKNYVKDHINAVHNGVKNLCDICGKTFIRKGDLTRHVKSAHNGVTYSCNICGKTLSTKWYLQIHIESIHNSITYSCDNCGKTFTTKGDLTRHVKSAHNGVTYSCNICGKTLSTKWYLQIHIESIHNSITYSCDNCGKTFTRKGNLTKHVKSAHNGVTFSCGICGKRFATSSYLKIHMDSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485153;
- 90% Identity
- iTF_01485153;
- 80% Identity
- iTF_01485153;